View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8194_low_9 (Length: 215)

Name: NF8194_low_9
Description: NF8194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8194_low_9
NF8194_low_9
[»] chr1 (4 HSPs)
chr1 (1-215)||(39954831-39955045)
chr1 (12-212)||(39954648-39954848)
chr1 (12-87)||(39955031-39955106)
chr1 (10-119)||(39954648-39954757)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 39955045 - 39954831
Alignment:
Q  1 gagcttcattctcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39955045 gagcttcattctcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttc 39954946  T
Q  101 tatctcctccttcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcagtgtttcattccctttcttgagttcatctgtttct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954945 tatctcctccttcaacttcattagttcattactaatatcatctttgtgcttcagttcaagcttcagtgtttcattccctttcttgagttcatctgtttct 39954846  T
Q  201 tccctcagcttcatt 215  Q
    |||||||||||||||    
T  39954845 tccctcagcttcatt 39954831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 39954848 - 39954648
Alignment:
Q  12 tcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttctatctcctcct 111  Q
    |||||||||| ||||| ||| |||||    |||||| ||||||  |||||||||  ||| || |||||||| |||||||||||| |||  ||||| |||     
T  39954848 tcttccctcagcttcattacttcattattgatggtacctttctgcttgagttcattcttctgtgcttcattttctttctcgagttgtttaatctcgtccc 39954749  T
Q  112 tcaacttcattagttcattactaatatcatctttgtgcttgagttcaagcttcagtgtttcattccctttcttgagttcatctgtttcttccctcagctt 211  Q
    ||||||||||||  ||||||| |||   |||||| || |||||| ||  |||| |||  | |||| ||||||| ||||  ||| |||||||||||| |||    
T  39954748 tcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttccctcaactt 39954649  T
Q  212 c 212  Q
    |    
T  39954648 c 39954648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 87
Target Start/End: Complemental strand, 39955106 - 39955031
Alignment:
Q  12 tcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctt 87  Q
    |||||||||||||||| ||| |||||||| |||||||||||||  || |||||| |  | || |||||||||||||    
T  39955106 tcttccctcaacttcattacttcattgcaaatggtatctttctgcttcagttcatctctctgagcttcattctctt 39955031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 39954757 - 39954648
Alignment:
Q  10 tctcttccctcaacttcactacctcattgcatatggtatctttctctttgagttcagccttttgcgcttcattctctttctcgagtcgttctatctcctc 109  Q
    |||| ||||||||||||| ||| ||||| || |||||||||||||  |||||| || |||| || || | |||| ||||||  ||| ||||||| || ||    
T  39954757 tctcgtccctcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttc 39954658  T
Q  110 cttcaacttc 119  Q
    | ||||||||    
T  39954657 cctcaacttc 39954648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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