View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8195_high_12 (Length: 210)
Name: NF8195_high_12
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8195_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 19975346 - 19975520
Alignment:
| Q |
18 |
atgaaacatagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaatacatgtgcatcaatatggtctgatgaatggtaatgttgagta |
117 |
Q |
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| T |
19975346 |
atgaaacgtagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaatacatgcgcatcaatatggtctgatgactgctaatgctgagta |
19975445 |
T |
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| Q |
118 |
acaggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctcctgctcacat |
192 |
Q |
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| T |
19975446 |
acaggtagcttaacgctatatgtgtgtatgtttgcaaccttagctccatggtctgcgtgcacctcctgctgacat |
19975520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 21017487 - 21017313
Alignment:
| Q |
18 |
atgaaacatagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaatacatgtgcatcaatatggtctgatgaatggtaatgttgagta |
117 |
Q |
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| T |
21017487 |
atgaaacgtagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaatacatgcgcatcaatatggtctgatgactgctaatgctgagta |
21017388 |
T |
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| Q |
118 |
acaggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctcctgctcacat |
192 |
Q |
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| T |
21017387 |
acaggtagcttaacgctatatgtgtgtatgtttgcaaccttagctccatggtctgcgtgcacctcctgctgacat |
21017313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 19974848 - 19975015
Alignment:
| Q |
26 |
tagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaa------tacatgtgcatcaatatggtctgatgaatggtaatgttgagtaac |
119 |
Q |
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| T |
19974848 |
tagtctgagatatttcaatatgttgtggggttgtatcaatagaaataaaagaaaatatttgcgcatcaatatggtctattggctgctaatgctgagtaac |
19974947 |
T |
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| Q |
120 |
aggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctcctgct |
187 |
Q |
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| T |
19974948 |
cggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctcctgct |
19975015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 21017985 - 21017818
Alignment:
| Q |
26 |
tagtctgagacttttcaatatgttgtgggactgtatcaatagaaataaa------tacatgtgcatcaatatggtctgatgaatggtaatgttgagtaac |
119 |
Q |
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| T |
21017985 |
tagtctgagatatttcaatatgttgtggggttgtatcaatagaaataaaagaaaatatttgcgcatcaatatggtctattggctgctaatgctgagtaac |
21017886 |
T |
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| Q |
120 |
aggtagcttaacgctatatgtgtgtatgtttgcaaccttaactccatggtctgtgtgcacctcctgct |
187 |
Q |
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| T |
21017885 |
cggtagcttaacgctatctatgtgtctgtttgctaactcaactccatggtctgcgtgcacctcctgct |
21017818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 27860109 - 27860164
Alignment:
| Q |
18 |
atgaaacatagtctgagacttttcaatatgttgtgggactgtatcaatagaaataa |
73 |
Q |
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||||| || ||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
27860109 |
atgaagcaaagtctgaaacttttcaatatgttgcggggttgtatcaatagaaataa |
27860164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 8229667 - 8229621
Alignment:
| Q |
27 |
agtctgagacttttcaatatgttgtgggactgtatcaatagaaataa |
73 |
Q |
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| T |
8229667 |
agtctgagacttttcaatatgttatggggctgtatcaatataaataa |
8229621 |
T |
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