View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8195_high_5 (Length: 307)
Name: NF8195_high_5
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8195_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 19239078 - 19238810
Alignment:
| Q |
18 |
accaattgcagaattttt-caccagaatccaagtcacaacgcgtgtgaacgtagaatccaagtcagaacgcgtgtgaacgtaaggcctaaccatctgtac |
116 |
Q |
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| T |
19239078 |
accaattgcagatttttttcaccagaatccaagtcgcaacgcgtgtgaacgtagaatctaagtcacaacgcgtgtgaacgtaaggcctaaccatctgtac |
19238979 |
T |
|
| Q |
117 |
catcacaatttgtttcatgtccattagttagaatccatcaaatgagtagtggttacaggctaatatagcctatgaaactagttattgcacatttaagaaa |
216 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
19238978 |
catcaaaatttgtttcatgtccattagttagaatccatcaaatgagtagtggttataggctaatatagcctatgaaactagttattgcacatttaaaaaa |
19238879 |
T |
|
| Q |
217 |
atagcgttaaaactcttagggagagtttgccattcatttaggttctataaagttcgataaattaatctc |
285 |
Q |
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| T |
19238878 |
atagcgttaaaacttttagggagagtttgtcgtccatttaggtctcataaagtttgataaattaatctc |
19238810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 35692551 - 35692589
Alignment:
| Q |
221 |
cgttaaaactcttagggagagtttgccattcatttaggt |
259 |
Q |
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| T |
35692551 |
cgttaaaactcttagggagagtttgccgctcatttaggt |
35692589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 36982421 - 36982457
Alignment:
| Q |
221 |
cgttaaaactcttagggagagtttgccattcatttag |
257 |
Q |
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| T |
36982421 |
cgttaaaactcttagggagagtttgtcatccatttag |
36982457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 4710033 - 4709995
Alignment:
| Q |
221 |
cgttaaaactcttagggagagtttgccattcatttaggt |
259 |
Q |
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| T |
4710033 |
cgttaaaactcttagagagagtttgccactcatttaggt |
4709995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 17135160 - 17135188
Alignment:
| Q |
219 |
agcgttaaaactcttagggagagtttgcc |
247 |
Q |
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| T |
17135160 |
agcgttaaaactcttagggagagtttgcc |
17135188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 2664954 - 2664918
Alignment:
| Q |
223 |
ttaaaactcttagggagagtttgccattcatttaggt |
259 |
Q |
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|||||||||||||| |||||||||||| ||||||||| |
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| T |
2664954 |
ttaaaactcttaggaagagtttgccatccatttaggt |
2664918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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