View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8195_low_10 (Length: 276)
Name: NF8195_low_10
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8195_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 125 - 267
Target Start/End: Complemental strand, 5768705 - 5768563
Alignment:
| Q |
125 |
tttgctctgcaccttactgtgcccagtgagataaaccaaggacatccactacactactcaagcatgcaacctaacttgtaatcctgaacatgaaataaga |
224 |
Q |
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| T |
5768705 |
tttgctctgcaccttactgtgcccagtgagataaaccaaggacatccactacactactcaagcatgcaacctaacttgtaatcctgaacatgaaataaga |
5768606 |
T |
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| Q |
225 |
tccaaatgctgattcacgttgtagaagaatacgaacaccaaac |
267 |
Q |
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| T |
5768605 |
tccaaatgctaattcacgttgtagaagaatacgaacaccaaac |
5768563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 14002230 - 14002325
Alignment:
| Q |
17 |
aattgtaatacaccaaagttgcatttccatcttcaatcctcttcagcccttcaaatgtcttgtaacagcaatagaaaatagatatcaacaatatta |
112 |
Q |
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| T |
14002230 |
aattgtaatacaccaaagttgtatttccatcttcaatcctcttcagcccttcaaatgtcttgtaacagcaatagaaaatagatatcaacaatatta |
14002325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 5768985 - 5768911
Alignment:
| Q |
19 |
ttgtaatacaccaaagttgcatttccatcttcaatcctcttcagcccttcaaatgtcttgtaacagcaatagaaaatagatat |
101 |
Q |
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| T |
5768985 |
ttgtaatacaccaaagttgcatttccatcttcaatcctc--------ttcaaatgtcttgtaacagaaatagaaaatagatat |
5768911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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