View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8195_low_11 (Length: 267)

Name: NF8195_low_11
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8195_low_11
NF8195_low_11
[»] chr8 (5 HSPs)
chr8 (10-247)||(7546104-7546341)
chr8 (24-75)||(16845654-16845705)
chr8 (24-75)||(24051955-24052006)
chr8 (181-236)||(9740609-9740664)
chr8 (186-236)||(44097643-44097693)
[»] chr3 (7 HSPs)
chr3 (104-247)||(9166652-9166796)
chr3 (6-76)||(13980597-13980667)
chr3 (6-74)||(13991931-13991999)
chr3 (24-74)||(9721485-9721535)
chr3 (24-74)||(9730235-9730285)
chr3 (24-75)||(40800559-40800610)
chr3 (33-83)||(13991048-13991098)
[»] chr5 (4 HSPs)
chr5 (178-241)||(23924740-23924803)
chr5 (182-236)||(26527508-26527562)
chr5 (29-75)||(54363-54409)
chr5 (182-238)||(26755866-26755922)
[»] chr1 (3 HSPs)
chr1 (24-79)||(33491441-33491496)
chr1 (24-76)||(27178890-27178942)
chr1 (24-74)||(33498341-33498391)
[»] scaffold0211 (1 HSPs)
scaffold0211 (24-74)||(27091-27141)
[»] scaffold0004 (1 HSPs)
scaffold0004 (24-74)||(350914-350964)
[»] chr7 (5 HSPs)
chr7 (24-74)||(16648610-16648660)
chr7 (24-74)||(17622971-17623021)
chr7 (33-75)||(557773-557815)
chr7 (33-74)||(575957-575998)
chr7 (25-74)||(25494027-25494076)
[»] chr4 (1 HSPs)
chr4 (24-74)||(6156738-6156788)
[»] chr2 (2 HSPs)
chr2 (24-74)||(22425165-22425215)
chr2 (24-83)||(43777178-43777236)
[»] scaffold0169 (1 HSPs)
scaffold0169 (24-74)||(11136-11186)
[»] chr6 (2 HSPs)
chr6 (24-74)||(14847266-14847316)
chr6 (24-74)||(14856122-14856172)
[»] scaffold1317 (1 HSPs)
scaffold1317 (25-74)||(1961-2010)


Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 7546104 - 7546341
Alignment:
Q  10 aatataatcatttctcttctctttaatattgtttttgttgttcttattataatagtttcataacaaaaacaatataatcattgtttttcttgtttccttc 109  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7546104 aatataatcatttctcttctctttaatcttgtttttgttgttcttattataatagtttcataataaaaacaatataatcattgtttttcttgtttccttc 7546203  T
Q  110 agcaagctgacaccgcttgtgttggaggatgtagttgcatggagtctgctgttcatttggttttgtgttgcaacatctttggcagcatgtggcatctcat 209  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  7546204 agcaagctgacaccgcttgtgttggaggatgtagctgcatggagtctgcggttcatttggttctgtgttgcgacatcttcggcagcatgtggcatctcat 7546303  T
Q  210 ttatcagtgggatgatatctctttcatttcccttgcat 247  Q
    ||||||||||| || ||||||||||||||||| |||||    
T  7546304 ttatcagtgggttggtatctctttcatttcccctgcat 7546341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 16845705 - 16845654
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataacaa 75  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||| ||||||    
T  16845705 tcttctctttaatcttgtttttcttggtcttattataatagtttcttaacaa 16845654  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 24052006 - 24051955
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataacaa 75  Q
    ||||||||||||| ||||| ||||| |||||||| |||||||||||||||||    
T  24052006 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataacaa 24051955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 9740664 - 9740609
Alignment:
Q  181 aacatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcat 236  Q
    |||||||||||| || ||||||||||||||||| |||||| || |||| |||||||    
T  9740664 aacatctttggcggcttgtggcatctcatttataagtgggctggtatcactttcat 9740609  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 44097693 - 44097643
Alignment:
Q  186 ctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcat 236  Q
    |||||||||| |||||||||| |||||| |||||  |||||||||||||||    
T  44097693 ctttggcagcttgtggcatcttatttataagtggattgatatctctttcat 44097643  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 247
Target Start/End: Original strand, 9166652 - 9166796
Alignment:
Q  104 tccttcagcaagctgacaccgcttgtgttggaggatgtagttgcatggagtctgctgtt-catttggttttgtgttgcaacatctttggcagcatgtggc 202  Q
    |||||||||| ||| ||||| |||||||||||||||||||   ||||||||| ||  || |||||| ||||| ||||| |||||||||||||  | ||||    
T  9166652 tccttcagcatgctaacaccacttgtgttggaggatgtagcgacatggagtcagcgatttcatttgattttgcgttgcgacatctttggcagtttatggc 9166751  T
Q  203 atctcatttatcagtgggatgatatctctttcatttcccttgcat 247  Q
    |||| |||||||||| || || ||| ||||||  ||||| |||||    
T  9166752 atctaatttatcagttggttggtatatctttcccttcccctgcat 9166796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 76
Target Start/End: Complemental strand, 13980667 - 13980597
Alignment:
Q  6 gaataatataatcatttctcttctctttaatattgtttttgttgttcttattataatagtttcataacaaa 76  Q
    ||||||||||||||| | ||||||||||||| ||||| || || |||||||| ||||||||||||||||||    
T  13980667 gaataatataatcatctttcttctctttaatcttgttcttcttattcttattctaatagtttcataacaaa 13980597  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 13991999 - 13991931
Alignment:
Q  6 gaataatataatcatttctcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    |||||||||||| || | ||||||||||||| ||||| || || |||||||| ||||||||||||||||    
T  13991999 gaataatataattatctttcttctctttaatcttgttcttcttattcttattctaatagtttcataaca 13991931  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 9721535 - 9721485
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  9721535 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataaca 9721485  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 9730285 - 9730235
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  9730285 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataaca 9730235  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 40800610 - 40800559
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataacaa 75  Q
    ||||||||||||| ||||| ||||| ||||||||  ||||||||||||||||    
T  40800610 tcttctctttaatcttgttcttgttcttcttattccaatagtttcataacaa 40800559  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 13991048 - 13991098
Alignment:
Q  33 taatattgtttttgttgttcttattataatagtttcataacaaaaacaata 83  Q
    |||| ||||| ||||| |||||||| ||||||||||||||||||| |||||    
T  13991048 taatcttgttcttgttcttcttattctaatagtttcataacaaaatcaata 13991098  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 23924803 - 23924740
Alignment:
Q  178 tgcaacatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcatttccc 241  Q
    |||||||||||||| ||| ||||| |||||||||||||||||| || ||||||||| |||||||    
T  23924803 tgcaacatctttggtagcttgtggtatctcatttatcagtgggttggtatctcttttatttccc 23924740  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 26527562 - 26527508
Alignment:
Q  182 acatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcat 236  Q
    ||||||||||| || ||||||||||||||||| |||||| || ||||||||||||    
T  26527562 acatctttggcggcttgtggcatctcatttataagtgggttggtatctctttcat 26527508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 54409 - 54363
Alignment:
Q  29 tctttaatattgtttttgttgttcttattataatagtttcataacaa 75  Q
    |||||||| |||||||| ||||| ||||| |||||||||||||||||    
T  54409 tctttaatcttgtttttcttgtttttattctaatagtttcataacaa 54363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 26755866 - 26755922
Alignment:
Q  182 acatctttggcagcatgtggcatctcatttatcagtgggatgatatctctttcattt 238  Q
    ||||||||||  || ||||||||||| ||||| |||||| || ||||||||||||||    
T  26755866 acatctttggtggcctgtggcatctcgtttataagtgggttggtatctctttcattt 26755922  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 33491496 - 33491441
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataacaaaaac 79  Q
    ||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||    
T  33491496 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataacaaaaac 33491441  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 27178942 - 27178890
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataacaaa 76  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||    
T  27178942 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataacaaa 27178890  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 33498391 - 33498341
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  33498391 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataaca 33498341  T

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Target: scaffold0211 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 27091 - 27141
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  27091 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataaca 27141  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 350964 - 350914
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  350964 tcttctctttaatcttgttcttgttcttcttattttaatagtttcataaca 350914  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 16648610 - 16648660
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  16648610 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataaca 16648660  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 17622971 - 17623021
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  17622971 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataaca 17623021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 557815 - 557773
Alignment:
Q  33 taatattgtttttgttgttcttattataatagtttcataacaa 75  Q
    |||| ||||| ||||| ||||||||||||||||||||||||||    
T  557815 taatcttgttcttgttcttcttattataatagtttcataacaa 557773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 575998 - 575957
Alignment:
Q  33 taatattgtttttgttgttcttattataatagtttcataaca 74  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  575998 taatcttgttcttgttcttcttattataatagtttcataaca 575957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 25494027 - 25494076
Alignment:
Q  25 cttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    |||||||||||| ||||| || || |||||||| ||||||||||||||||    
T  25494027 cttctctttaatcttgttcttcttattcttattttaatagtttcataaca 25494076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 6156738 - 6156788
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  6156738 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataaca 6156788  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 22425165 - 22425215
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  22425165 tcttctctttaatcttgttcttgttcttcttattctaatagtttcataaca 22425215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 43777178 - 43777236
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataacaaaaacaata 83  Q
    ||||||||||||| || || ||||| |||||||| |||||||||||||||| ||||||||    
T  43777178 tcttctctttaatctt-ttcttgttcttcttattctaatagtttcataacacaaacaata 43777236  T

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Target: scaffold0169 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 11136 - 11186
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||||||||||| ||||| || || |||||||| ||||||||||||||||    
T  11136 tcttctctttaatcttgttcttcttattcttattctaatagtttcataaca 11186  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 14847266 - 14847316
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||| ||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  14847266 tcttccctttaatcttgttattgttcttcttattctaatagtttcataaca 14847316  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 14856122 - 14856172
Alignment:
Q  24 tcttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    ||||| ||||||| ||||| ||||| |||||||| ||||||||||||||||    
T  14856122 tcttccctttaatcttgttcttgttcttcttattctaatagtttcataaca 14856172  T

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Target: scaffold1317 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1317
Description:

Target: scaffold1317; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 2010 - 1961
Alignment:
Q  25 cttctctttaatattgtttttgttgttcttattataatagtttcataaca 74  Q
    |||||||||||| ||||| || || |||||||| ||||||||||||||||    
T  2010 cttctctttaatcttgttcttcttattcttattttaatagtttcataaca 1961  T

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