View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8195_low_12 (Length: 264)
Name: NF8195_low_12
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8195_low_12 |
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| [»] scaffold1918 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 11879065 - 11879327
Alignment:
| Q |
1 |
atcacttacaccaaaacatctt---ttcttccaaacttttcttctacttctaagaatattaggaagagtaactaagaaccaaagcattggaggtgctaag |
97 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| ||| ||| ||||||||||||||| ||| |
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| T |
11879065 |
atcacttacaccaaaacatcttcttttcttccaaacttttcttctacttctaagaatattagggaggttaagtaataacataagcattggaggtgccaag |
11879164 |
T |
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| Q |
98 |
ttttttcattctacccatgactgctaaggccagtagccccaaaaggggtcataactggccaccaatggcaatggcattggccattgttttgatttcaact |
197 |
Q |
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| T |
11879165 |
ttttttctttctacccatgactgttaaggccagtagccccaaaaggggtcataactggccaccaatggcaatggcattggccattgttttgatttcaact |
11879264 |
T |
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| Q |
198 |
agtgtggtttctgctgctgcagatagttatatttactcttctcctccaccaccttacgagtat |
260 |
Q |
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| T |
11879265 |
agtgtggtttctgctgctgcagatagttatatttactcttctcctccaccaccttacgagtat |
11879327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 106 - 259
Target Start/End: Original strand, 11901772 - 11901922
Alignment:
| Q |
106 |
ttctacccatgactgctaaggccagtagccccaaaaggggtcataactggccaccaatggcaatggcattggccattgttttgatttcaactagtgtggt |
205 |
Q |
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| T |
11901772 |
ttctatccatgactgctagggctagttgccccaaaatggggcatttttggccacaaatggcaatggcattggccattgttttgatttctactactatggt |
11901871 |
T |
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| Q |
206 |
ttctgctgctgcagatagttatatttactcttctcctccaccaccttacgagta |
259 |
Q |
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| T |
11901872 |
ttctgcttct---gatagctacatttactcttcgcctccaccaccttatgagta |
11901922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 52821978 - 52821914
Alignment:
| Q |
162 |
atggcaatggcattggccattgttttgatttcaactagtgtggtttctgctgctgcagatagtta |
226 |
Q |
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| T |
52821978 |
atggccatggcattggccattgttctcatttctactacagtggtttctgttgctgctgatggtta |
52821914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold1918
Description:
Target: scaffold1918; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 98 - 253
Target Start/End: Complemental strand, 747 - 592
Alignment:
| Q |
98 |
ttttttcattctacccatgactgctaaggccagtagccccaaaaggggtcataactggccaccaatggcaatggcattggccattgttttgatttcaact |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
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| T |
747 |
ttttttcattctacccatgactgctaaggccagtagccccaaaaggggtcataactggccaccaatggcaatggcattcgtcattgttttgatttcgact |
648 |
T |
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| Q |
198 |
agtgtggtttctgctgctgcagatagttatatttactcttctcctccaccacctta |
253 |
Q |
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| T |
647 |
tctgtggtttctgctgctgcagatagttatatttactcttctcctccaccacctta |
592 |
T |
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