View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8195_low_13 (Length: 254)
Name: NF8195_low_13
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8195_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 16684503 - 16684744
Alignment:
| Q |
1 |
tttatagtgaaacaatgcagaaaaagat--cctttaacgaatatattttgaagcattatagataaaatgtcaataatgaagaaaatcggtgtataactga |
98 |
Q |
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||||||||||||||||||||||||| || |||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16684503 |
tttatagtgaaacaatgcagaaaaaaatatcctttatccgatatattttgaagcattagagataaaatgttaataatgaagaaaatcggtgtataactga |
16684602 |
T |
|
| Q |
99 |
actcttgagacatacacaacaaatgttatatagcttacctggattatcttcttgcaaatgctgaagctcaaactttcctcgagtgcccgatcactcgtac |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16684603 |
actcttgagacatacacaacaaatgttatatagcttacctggattatcttcttgcaaatgctgaagctcaaactttcctcgagtgcccgatcactcgtac |
16684702 |
T |
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| Q |
199 |
gcatccttcctgcaagcctccctgaagtaactgaggtctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
16684703 |
gcatccttcctgcaagcctccctgaagtaactgaggtctctg |
16684744 |
T |
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