View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8195_low_2 (Length: 502)
Name: NF8195_low_2
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8195_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 20602862 - 20602404
Alignment:
| Q |
1 |
tagtgggaagggtgcggttgatttttgattcacaacgggagatgcaaactcgatagagaaagaaatgaagagatgtcgaaccttagaaatcaataaggga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||| |
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|
| T |
20602862 |
tagtgggaagggtgcggttgatttttgattcacaacgggagatgcaaactcgatagataaagaaatgaagagatgtcgaaccctagaagtcaataaagga |
20602763 |
T |
|
| Q |
101 |
gagatggcagcgaggttgacggcagctgaaa-aaaggttgatagtgatgggaggttagggtggtggatttgaaggtgaaa-ggaatagatgaacaatttt |
198 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |||||||||| |||| ||||||||||||||| |||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
20602762 |
gagatggcagcgaggctgacggcag-tgaaagaaaggttgatggtgacgggaggttagggtggcggatctgaaggtgaaaaggaatatatgaacaatttt |
20602664 |
T |
|
| Q |
199 |
gggaaaagagaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaagaataaatcgattccaaaagaagaagattgaattggtg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
20602663 |
gggaaaagagaaattgaaacatctcaagagttagagagggagagaaacttagaatcaatgaagaataaatcgattccaaaagaagaagattgaatcaatg |
20602564 |
T |
|
| Q |
299 |
aaaagggttgtagggtttaagagtgaaattgagaacaaactgaggtgttgatatgtgcagtgagatgtgtttctctgaaaatacacgtaagaaaggaaga |
398 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||||||||| |
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|
| T |
20602563 |
aaaagggttgtagggtttaagaatgaaattgagaacaaactgaggtgttgatatgtgcaatgagatgcgtttctttgaaaatacatgtaagaaaggaaga |
20602464 |
T |
|
| Q |
399 |
gaaagagctcacgacgtttcttaagtctgcattgagaaaagtgtgcatagtaattgtcatagt |
461 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20602463 |
gaaagagctc---acgtttcttaagtctgtattgagaaaagtgtgcatagtaattgtcatagt |
20602404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 8506649 - 8507107
Alignment:
| Q |
1 |
tagtgggaagggtgcggttgatttttgattcacaacgggagatgcaaactcgat----agagaaagaaatgaagagatgtcgaaccttagaaatcaataa |
96 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |||||| |
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|
| T |
8506649 |
tagtgggaagggtgcggttgattttttattcacaacgggagatgcaaactcgatcgatagataaagaaatgaagagatgtcgaaccctagaagtcaatat |
8506748 |
T |
|
| Q |
97 |
gggagagatggcagcgaggttgacggcagctgaaaaaaggttgatagtgatgggaggttagggtggtggatttgaaggtgaaaggaatagatgaacaatt |
196 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||||||||| |||| ||||||||||||||| |||| ||||||||||||||||| |||||||||| |
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|
| T |
8506749 |
aggagagatggcagcgaggctgacggcagcggaagaaaggttgatggtgacgggaggttagggtggcggatctgaaggtgaaaggaatatatgaacaatt |
8506848 |
T |
|
| Q |
197 |
ttgggaaaagagaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaagaataaatcgattccaaaagaagaagattgaattgg |
296 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
8506849 |
ttgggaaaagagaaattgaaacatctcaa---ttagagagggagagaaacttagaatcaatgaagaatacatcgattccaaaagaagaagattgaatcaa |
8506945 |
T |
|
| Q |
297 |
tgaaaagggttgtagggtttaagagtgaaattgagaacaaactgaggtgttgatatgtgcagtgagatgtgtttctctgaaaatacacgtaagaaaggaa |
396 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
8506946 |
tgaaaagggttgtagggtttaagaatgaaattgagaacaaactgaggtgttgatatgtgcagtgagatgtgtttctttgaaaatacacgtaagaaaggaa |
8507045 |
T |
|
| Q |
397 |
gagaaagagctcacgacgtttcttaagtctgcattgagaaaagtgtgcatagtaattgtcatagt |
461 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8507046 |
gagaaagagctc---acgtttcttaagtctgtattgagaaaagtgtgcatagtaattgtcatagt |
8507107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 168 - 461
Target Start/End: Complemental strand, 51647362 - 51647072
Alignment:
| Q |
168 |
ttgaaggtgaaaggaatagatgaacaattttgggaaaagagaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaagaataaa |
267 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51647362 |
ttgatggtgaaaggaatatatgaacaattttgggaaaagagaaattgaaacatctcaagagttagagagggagagaaacttagaatcaatgaagaataaa |
51647263 |
T |
|
| Q |
268 |
tcgattccaaaagaagaagattgaattggtgaaaagggttgtagggtttaagagtgaaattgagaacaaactgaggtgttgatatgtgcagtgagatgtg |
367 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| | |
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|
| T |
51647262 |
ttgattccaaaagaagaagattgaattaatgaaaagggttgtagggtttaagaatgaaattgagaagaaactgaggtgttgacatgtgcagtgagatgcg |
51647163 |
T |
|
| Q |
368 |
tttctctgaaaatacacgtaagaaaggaagagaaagagctcacgacgtttcttaagtctgcattgagaaaagtgtgcatagtaattgtcatagt |
461 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51647162 |
tttctttgaaaatacacgtaagaaaggaagagaaagagctc---acgtttcttaagtctgtattgagaaaagtgtgcatagtaattgtcatagt |
51647072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 32015169 - 32015505
Alignment:
| Q |
1 |
tagtgggaagggtgcggttgatttttgattcacaacgggagatgcaaactcgatagagaaagaaatgaagagatgtcgaaccttagaaatcaataaggga |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
32015169 |
tagtgggaagggtgcggttgatgtttgattcacaaccggagatgcaaactcgactgagaaagaaatgaagagatgtcgaaccctaaaagtcaataaggga |
32015268 |
T |
|
| Q |
101 |
gagatggcagcgaggttgacggcagctgaaaaaaggttgatagtgatgggaggtt---agggtggtggatttgaaggtgaaaggaatagatgaacaattt |
197 |
Q |
| |
|
|||| ||| |||||||||| || || ||| |||||||||||||| |||||||| | | | ||| ||||||||| |||||| |||||||||| |
|
|
| T |
32015269 |
gagacagcaacgaggttgacagcggcggaagaaaggttgatagtggcgggaggttgaaacgttttgggagaagaaggtgaagggaatacgtgaacaattt |
32015368 |
T |
|
| Q |
198 |
tgggaaaagagaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaagaataaatcgattccaaaagaagaagattgaattggt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
32015369 |
tgggaaaagagaaattgaaacatctcaagagttagagagggagagaaactgagaatcaatgaagaataaatcgattccaaaagaagaatattgaattagt |
32015468 |
T |
|
| Q |
298 |
gaaaagggttgtagggtttaagagtgaaattgagaac |
334 |
Q |
| |
|
|||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
32015469 |
gaaaagggttatagagtttgagagtgaaattgagaac |
32015505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 51647498 - 51647353
Alignment:
| Q |
1 |
tagtgggaagggtgcggttgatttttgattcacaacgggagatgcaaactcgatagagaaagaaatgaagagatgtcgaaccttagaaatcaataaggga |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
51647498 |
tagtgggaatggtgcggttgatttttgattcacaacgggagatgcaaactcgatagataaagaaatgaagagatgtcgaaccctagaagtcaataaagga |
51647399 |
T |
|
| Q |
101 |
gagatggcagcgaggttgacggcagctgaaaaaaggttgatagtga |
146 |
Q |
| |
|
||||||||||||||| ||||| |||| ||| |||||||||| |||| |
|
|
| T |
51647398 |
gagatggcagcgaggctgacgacagcggaagaaaggttgatggtga |
51647353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 170 - 339
Target Start/End: Complemental strand, 23739157 - 23738985
Alignment:
| Q |
170 |
gaaggtgaaaggaatagatgaacaattttgggaaaag---agaaattgaaacatctcaagagttaaagagggagagaaacttagaatcaatgaagaataa |
266 |
Q |
| |
|
|||| |||||||||||||||||| ||||| || |||| ||||||||||||||||||| ||| | |||| ||||| | |||||||||||||||||| |
|
|
| T |
23739157 |
gaagatgaaaggaatagatgaaccatttttggtaaagagaagaaattgaaacatctcaaacgttggaatgggaaagaaattgagaatcaatgaagaataa |
23739058 |
T |
|
| Q |
267 |
atcgattccaaaagaagaagattgaattggtgaa-aagggttgtagggtttaagagtgaaattgagaacaaact |
339 |
Q |
| |
|
|| |||||||||||||||||||| ||| ||||| ||||||| || ||||| ||||| |||||||||||||||| |
|
|
| T |
23739057 |
at-gattccaaaagaagaagatttaatcagtgaagaagggttatatggtttgagagtaaaattgagaacaaact |
23738985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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