View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8195_low_3 (Length: 431)
Name: NF8195_low_3
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8195_low_3 |
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| [»] chr8 (7 HSPs) |
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| [»] scaffold0417 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 19975097 - 19975367
Alignment:
| Q |
161 |
tcaatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatca |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19975097 |
tcaatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatca |
19975196 |
T |
|
| Q |
261 |
ggaccagtagtagtattctgaatatctagcacaaagtttgtagccaaagtgagaaccgactgaacaccatgggcagtatgcactaaggtcatgccatgta |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
19975197 |
ggaccagtagtagtattctgaatatctagcacaaagtttctagcaaaagtgagaaccggctgaacaccatgggtagtatgcactaaggtcatgccatgta |
19975296 |
T |
|
| Q |
361 |
atggtgattgttgtctaactagctcatcagagatgttatgtcaagtcatatgaaacatagtctgagacttt |
431 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
19975297 |
atggtgattgttgcctaactagctcatcagagacgttatgtcaagtcatatgaaacgtagtctgagacttt |
19975367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 161 - 431
Target Start/End: Complemental strand, 21017736 - 21017466
Alignment:
| Q |
161 |
tcaatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatca |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21017736 |
tcaatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatca |
21017637 |
T |
|
| Q |
261 |
ggaccagtagtagtattctgaatatctagcacaaagtttgtagccaaagtgagaaccgactgaacaccatgggcagtatgcactaaggtcatgccatgta |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
21017636 |
ggaccagtagtagtattctgaatatctagcacaaagtttctagcaaaagtgagaaccggctgaacaccatgggtagtatgcactaaggtcatgccatgta |
21017537 |
T |
|
| Q |
361 |
atggtgattgttgtctaactagctcatcagagatgttatgtcaagtcatatgaaacatagtctgagacttt |
431 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
21017536 |
atggtgattgttgcctaactagctcatcagagacgttatgtcaagtcatatgaaacgtagtctgagacttt |
21017466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 161 - 427
Target Start/End: Original strand, 19974589 - 19974857
Alignment:
| Q |
161 |
tcaatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatca |
260 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| | |
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| T |
19974589 |
tcaatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactggatccaccaggtcatta |
19974688 |
T |
|
| Q |
261 |
ggaccagtagtagtattctgaatatctagcacaaagtttgtagccaaagtgagaaccgactgaacaccatgggcagtatgcactaag--gtcatgccatg |
358 |
Q |
| |
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| |||| |||| |||||||||||||| ||||||||| ||||||||| ||||||||| || |||||||||||||||||||||||| | || |||| |
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| T |
19974689 |
gaaccaacagtaatattctgaatatctggcacaaagtatgtagccaacgtgagaaccagttggacaccatgggcagtatgcactaagtttttgtgtcatg |
19974788 |
T |
|
| Q |
359 |
taatggtgattgttgtctaactagctcatcagagatgttatgtcaagtcatatgaaacatagtctgaga |
427 |
Q |
| |
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||||| ||||||||| ||||||||| ||||||||||||||||| || ||||||||| |||||||||| |
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| T |
19974789 |
taatgatgattgttgcctaactagcacatcagagatgttatgtaaaaacatatgaaatgtagtctgaga |
19974857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 161 - 427
Target Start/End: Complemental strand, 21018244 - 21017976
Alignment:
| Q |
161 |
tcaatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatca |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| | |
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| T |
21018244 |
tcaatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactggatccaccaggtcatta |
21018145 |
T |
|
| Q |
261 |
ggaccagtagtagtattctgaatatctagcacaaagtttgtagccaaagtgagaaccgactgaacaccatgggcagtatgcactaag--gtcatgccatg |
358 |
Q |
| |
|
| |||| |||| |||||||||||||| ||||||||| ||||||||| ||||||||| || |||||||||||||||||||||||| | || |||| |
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| T |
21018144 |
gaaccaacagtaatattctgaatatctggcacaaagtatgtagccaacgtgagaaccagttggacaccatgggcagtatgcactaagtttttgtgtcatg |
21018045 |
T |
|
| Q |
359 |
taatggtgattgttgtctaactagctcatcagagatgttatgtcaagtcatatgaaacatagtctgaga |
427 |
Q |
| |
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||||| ||||||||| ||||||||| ||||||||||||||||| || ||||||||| |||||||||| |
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| T |
21018044 |
taatgatgattgttgcctaactagcacatcagagatgttatgtaaaaacatatgaaatgtagtctgaga |
21017976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 163 - 431
Target Start/End: Original strand, 27859862 - 27860130
Alignment:
| Q |
163 |
aatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatcagg |
262 |
Q |
| |
|
||||| ||||||||| ||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||| || ||||| |||||| ||| | |
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| T |
27859862 |
aatagagagtgaaagaaacttcagctgaggcattttgagctaataaatcttgcactaaattcatttccttatgtagaattggatccaccgggtcttcatg |
27859961 |
T |
|
| Q |
263 |
accagtagtagtattctgaatatctagcacaaagtttgtagccaaagtgagaaccgactgaacaccatgggcagtatgcactaaggtcatgccatgtaat |
362 |
Q |
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|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |||||||| |
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| T |
27859962 |
accagtagtaatattctgaatacttggcacaaagtttgtagccaaagtgagaaccgaatggacaccatgggcagcctgcactaaggtcatgtcatgtaat |
27860061 |
T |
|
| Q |
363 |
ggtgattgttgtctaactagctcatcagagatgttatgtcaagtcatatgaaacatagtctgagacttt |
431 |
Q |
| |
|
|||||||||| |||||||||||| ||||| ||||||| | | |||||||| || ||||||| ||||| |
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| T |
27860062 |
agtgattgttgcataactagctcattagagacgttatgtgacgacatatgaagcaaagtctgaaacttt |
27860130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 19974438 - 19974473
Alignment:
| Q |
38 |
atcccaactaggtatcaacctaattgaaactctcat |
73 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
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|
| T |
19974438 |
atcccaacttggtatcaacctaattgaaactctcat |
19974473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 21018395 - 21018360
Alignment:
| Q |
38 |
atcccaactaggtatcaacctaattgaaactctcat |
73 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| |
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| T |
21018395 |
atcccaacttggtatcaacctaattgaaactctcat |
21018360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0417 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0417
Description:
Target: scaffold0417; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 166 - 401
Target Start/End: Complemental strand, 5342 - 5113
Alignment:
| Q |
166 |
agggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatcaggacc |
265 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| || ||||||||||||||||| ||| |||| ||||| ||||| |||||||||| |||| |
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|
| T |
5342 |
agggagtgaaaggaacttcaactgaggcactttgagctaatacatcttgcactaaattcatttacttttgtataactggatccaacgggtcatcaagacc |
5243 |
T |
|
| Q |
266 |
agtagtagtattctgaatatctagcacaaagtttgtagccaaagtgagaaccgactgaacaccatgggcagtatgcactaaggtcatgccatgtaatggt |
365 |
Q |
| |
|
|| | || ||| || |||||| ||||||||| |||||||||||| |||| || || ||| |||| ||||||||||||||| ||||||||||| |
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| T |
5242 |
agcaataatatactaaatatccggcacaaagtctgtagccaaagtaagaatcggct------agtggacagtctgcactaaggtcatgtcatgtaatggt |
5149 |
T |
|
| Q |
366 |
gattgttgtctaactagctcatcagagatgttatgt |
401 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||||||| |
|
|
| T |
5148 |
gattgttgcttaactagctcatcaaagacgttatgt |
5113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 279
Target Start/End: Complemental strand, 8229890 - 8229774
Alignment:
| Q |
163 |
aatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatcagg |
262 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||||| ||||||||| |||| ||||||||||||||| ||||||||||| ||| | |||||||||||| |
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|
| T |
8229890 |
aataggcagtgaaaggaatttcagctgaggcactttgaactaataaatcttgcgctaaattcatttcctgctgtagaactggatcaaccgggtcatcagg |
8229791 |
T |
|
| Q |
263 |
accagtagtagtattct |
279 |
Q |
| |
|
|||| |||| |||||| |
|
|
| T |
8229790 |
accaacagtaatattct |
8229774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 228
Target Start/End: Complemental strand, 45830947 - 45830880
Alignment:
| Q |
163 |
aatagggagtgaaaggaacttcagctgaga--cactttgagctaataaattttgcactaaattcattt |
228 |
Q |
| |
|
||||||||| |||| ||||||||| ||||| |||||||||||||||| | ||||||||||||||||| |
|
|
| T |
45830947 |
aatagggagcgaaaagaacttcagttgagagacactttgagctaataagtcttgcactaaattcattt |
45830880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 10177890 - 10177786
Alignment:
| Q |
163 |
aatagggagtgaaaggaacttcagctgagacactttgagctaataaattttgcactaaattcatttccttctgtagaactgtatccatcgggtcatcagg |
262 |
Q |
| |
|
|||||||||||| ||||| || ||||| |||| | ||||||||||| || ||| |||||||||||| |||||| | || |||||||||||| ||| | |
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|
| T |
10177890 |
aatagggagtgagtggaacatctactgaggcactgttagctaataaatctttcaccaaattcatttccctctgtaatattggatccatcgggtcgtcaag |
10177791 |
T |
|
| Q |
263 |
accag |
267 |
Q |
| |
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||||| |
|
|
| T |
10177790 |
accag |
10177786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 8612654 - 8612686
Alignment:
| Q |
18 |
catcaaggatcgccagaaacatcccaactaggt |
50 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
8612654 |
catcaaggagcgccagaaacatcccaactaggt |
8612686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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