View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8195_low_5 (Length: 405)

Name: NF8195_low_5
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8195_low_5
NF8195_low_5
[»] chr3 (39 HSPs)
chr3 (147-401)||(52037738-52037993)
chr3 (1-86)||(48117416-48117503)
chr3 (1-70)||(50745629-50745700)
chr3 (1-86)||(2935415-2935502)
chr3 (1-86)||(14838949-14839036)
chr3 (1-36)||(30664583-30664618)
chr3 (1-40)||(41957595-41957634)
chr3 (4-86)||(9158940-9159024)
chr3 (1-46)||(36925817-36925862)
chr3 (1-46)||(32656055-32656102)
chr3 (1-70)||(43894905-43894976)
chr3 (1-86)||(49361741-49361828)
chr3 (1-89)||(1834586-1834676)
chr3 (1-61)||(1901855-1901917)
chr3 (1-61)||(1911301-1911363)
chr3 (1-36)||(7039185-7039220)
chr3 (1-36)||(29525313-29525348)
chr3 (1-65)||(35368691-35368757)
chr3 (1-36)||(38692280-38692315)
chr3 (1-36)||(40419599-40419634)
chr3 (1-40)||(47849752-47849791)
chr3 (1-36)||(51032580-51032615)
chr3 (1-40)||(25959492-25959533)
chr3 (1-40)||(26279964-26280005)
chr3 (1-40)||(28269886-28269927)
chr3 (1-43)||(31017343-31017385)
chr3 (1-40)||(33007440-33007481)
chr3 (1-40)||(36869787-36869828)
chr3 (1-40)||(41877561-41877602)
chr3 (1-40)||(46473208-46473249)
chr3 (1-40)||(51672943-51672984)
chr3 (4-86)||(29846795-29846879)
chr3 (3-40)||(8066437-8066476)
chr3 (1-38)||(21481844-21481883)
chr3 (3-40)||(37215181-37215220)
chr3 (1-86)||(48205125-48205212)
chr3 (1-86)||(48490417-48490504)
chr3 (1-86)||(51385344-51385431)
chr3 (3-40)||(51410888-51410927)
[»] chr8 (24 HSPs)
chr8 (14-91)||(24616440-24616517)
chr8 (1-86)||(23709056-23709143)
chr8 (1-86)||(22836043-22836130)
chr8 (1-89)||(34247854-34247944)
chr8 (1-86)||(21649074-21649159)
chr8 (1-86)||(1422606-1422693)
chr8 (1-86)||(22203119-22203206)
chr8 (1-86)||(25430726-25430813)
chr8 (1-86)||(37471723-37471810)
chr8 (14-86)||(41776270-41776342)
chr8 (1-61)||(1796563-1796625)
chr8 (1-40)||(26871126-26871165)
chr8 (1-40)||(295626-295667)
chr8 (1-40)||(426181-426222)
chr8 (1-40)||(5502440-5502481)
chr8 (1-40)||(9000964-9001005)
chr8 (1-40)||(22767210-22767251)
chr8 (1-40)||(24946082-24946123)
chr8 (1-40)||(28927761-28927802)
chr8 (11-40)||(24503009-24503038)
chr8 (1-38)||(12045605-12045644)
chr8 (14-46)||(30943783-30943815)
chr8 (10-70)||(33692812-33692872)
chr8 (1-86)||(34838174-34838261)
[»] chr4 (34 HSPs)
chr4 (1-95)||(33914233-33914329)
chr4 (1-93)||(41170852-41170946)
chr4 (1-93)||(43864113-43864207)
chr4 (1-65)||(53781762-53781828)
chr4 (1-73)||(1728006-1728078)
chr4 (1-86)||(4878047-4878134)
chr4 (14-86)||(8614277-8614349)
chr4 (1-78)||(29577348-29577427)
chr4 (1-41)||(30042214-30042254)
chr4 (1-40)||(28676104-28676143)
chr4 (9-86)||(36110224-36110301)
chr4 (1-46)||(3475948-3475995)
chr4 (1-46)||(33776757-33776804)
chr4 (1-46)||(47998674-47998721)
chr4 (1-40)||(32621709-32621748)
chr4 (2-86)||(33776975-33777061)
chr4 (1-40)||(34974535-34974574)
chr4 (14-89)||(36081906-36081981)
chr4 (1-40)||(52891804-52891843)
chr4 (1-40)||(4896450-4896491)
chr4 (1-40)||(9162146-9162187)
chr4 (2-73)||(28899133-28899206)
chr4 (1-40)||(46794451-46794492)
chr4 (4-86)||(19807322-19807406)
chr4 (9-86)||(38960564-38960641)
chr4 (1-79)||(43307275-43307355)
chr4 (1-38)||(18874876-18874915)
chr4 (1-38)||(34027976-34028015)
chr4 (8-40)||(35332793-35332825)
chr4 (3-40)||(38952771-38952810)
chr4 (1-86)||(45678343-45678430)
chr4 (1-86)||(46355195-46355282)
chr4 (14-86)||(50291377-50291449)
chr4 (1-70)||(51107362-51107433)
[»] chr2 (36 HSPs)
chr2 (1-63)||(27529609-27529671)
chr2 (1-73)||(35203666-35203740)
chr2 (1-86)||(22296033-22296120)
chr2 (10-86)||(6885384-6885460)
chr2 (1-86)||(35705821-35705908)
chr2 (10-86)||(37076744-37076820)
chr2 (1-86)||(43205173-43205260)
chr2 (1-86)||(45202036-45202123)
chr2 (1-65)||(17999824-17999890)
chr2 (1-40)||(39454197-39454236)
chr2 (14-63)||(27538859-27538908)
chr2 (14-86)||(12256996-12257068)
chr2 (1-70)||(35798289-35798360)
chr2 (4-65)||(38777974-38778037)
chr2 (1-86)||(40115595-40115682)
chr2 (14-86)||(44897721-44897793)
chr2 (1-36)||(32755760-32755795)
chr2 (1-40)||(5067591-5067632)
chr2 (1-40)||(5167692-5167733)
chr2 (1-40)||(11229271-11229312)
chr2 (2-40)||(14140289-14140327)
chr2 (1-40)||(23344939-23344980)
chr2 (2-36)||(37109326-37109360)
chr2 (1-40)||(42081117-42081158)
chr2 (1-40)||(43725285-43725326)
chr2 (1-86)||(30340073-30340161)
chr2 (2-40)||(32688494-32688534)
chr2 (10-86)||(1277822-1277898)
chr2 (1-38)||(4263816-4263855)
chr2 (3-40)||(7086074-7086113)
chr2 (14-62)||(11828748-11828796)
chr2 (3-40)||(13104561-13104600)
chr2 (10-86)||(16463383-16463459)
chr2 (3-40)||(32750080-32750119)
chr2 (10-38)||(34373099-34373127)
chr2 (1-86)||(35008005-35008092)
[»] chr7 (33 HSPs)
chr7 (1-73)||(22331128-22331202)
chr7 (1-86)||(38197741-38197828)
chr7 (1-36)||(47764265-47764300)
chr7 (1-46)||(4971370-4971415)
chr7 (1-38)||(21588879-21588916)
chr7 (1-38)||(30391228-30391265)
chr7 (1-46)||(12141964-12142011)
chr7 (1-70)||(17039237-17039308)
chr7 (1-86)||(25272671-25272758)
chr7 (1-36)||(6822489-6822524)
chr7 (14-89)||(7295562-7295637)
chr7 (1-61)||(18157114-18157176)
chr7 (1-40)||(41077454-41077493)
chr7 (1-40)||(5378707-5378748)
chr7 (1-40)||(5978659-5978700)
chr7 (1-40)||(25940617-25940658)
chr7 (1-40)||(31982137-31982178)
chr7 (1-40)||(42204676-42204717)
chr7 (1-60)||(43107692-43107753)
chr7 (1-40)||(45607104-45607145)
chr7 (1-40)||(46148246-46148287)
chr7 (1-40)||(47193007-47193048)
chr7 (9-86)||(47945073-47945150)
chr7 (9-86)||(47950503-47950580)
chr7 (14-86)||(1709379-1709451)
chr7 (14-46)||(2323388-2323420)
chr7 (1-86)||(23034217-23034304)
chr7 (10-58)||(37848552-37848600)
chr7 (1-86)||(40108204-40108290)
chr7 (1-38)||(40693480-40693519)
chr7 (1-86)||(41538560-41538647)
chr7 (1-38)||(43079584-43079623)
chr7 (1-86)||(49142421-49142508)
[»] chr1 (36 HSPs)
chr1 (14-93)||(49314455-49314533)
chr1 (1-100)||(48962066-48962167)
chr1 (1-86)||(23399893-23399980)
chr1 (1-86)||(41564784-41564871)
chr1 (1-36)||(12972660-12972695)
chr1 (1-65)||(48689636-48689701)
chr1 (10-86)||(1100308-1100384)
chr1 (1-89)||(3919380-3919468)
chr1 (1-86)||(37947124-37947211)
chr1 (1-86)||(40240015-40240102)
chr1 (1-36)||(19651490-19651525)
chr1 (1-61)||(25098717-25098779)
chr1 (1-36)||(25988940-25988975)
chr1 (1-61)||(27352710-27352772)
chr1 (1-36)||(36930710-36930745)
chr1 (1-40)||(40052988-40053027)
chr1 (1-73)||(50460629-50460703)
chr1 (1-40)||(4604609-4604650)
chr1 (1-40)||(28253095-28253136)
chr1 (1-40)||(30631795-30631836)
chr1 (1-40)||(35846269-35846310)
chr1 (1-40)||(40596004-40596045)
chr1 (1-40)||(40610309-40610350)
chr1 (1-40)||(43612032-43612073)
chr1 (1-40)||(45740494-45740535)
chr1 (1-40)||(47059840-47059881)
chr1 (4-70)||(48389999-48390065)
chr1 (1-40)||(50659142-50659183)
chr1 (1-40)||(51339650-51339691)
chr1 (1-40)||(18959084-18959124)
chr1 (1-86)||(30414944-30415031)
chr1 (3-40)||(31436902-31436941)
chr1 (3-40)||(39010896-39010935)
chr1 (1-38)||(48325302-48325341)
chr1 (4-61)||(48872462-48872521)
chr1 (1-86)||(50796082-50796168)
[»] chr5 (26 HSPs)
chr5 (9-86)||(39032508-39032585)
chr5 (1-65)||(42364509-42364575)
chr5 (1-86)||(9957105-9957192)
chr5 (1-46)||(12718324-12718371)
chr5 (1-46)||(12779550-12779597)
chr5 (1-65)||(14126496-14126560)
chr5 (1-86)||(35595890-35595977)
chr5 (1-61)||(91295-91357)
chr5 (1-65)||(12891021-12891087)
chr5 (10-40)||(125183-125213)
chr5 (1-40)||(9636108-9636149)
chr5 (1-40)||(9714086-9714127)
chr5 (1-84)||(9940134-9940219)
chr5 (1-40)||(19376082-19376123)
chr5 (1-40)||(34381092-34381133)
chr5 (1-40)||(39595354-39595395)
chr5 (1-40)||(42909799-42909840)
chr5 (4-70)||(3031917-3031985)
chr5 (1-86)||(38919928-38920013)
chr5 (4-73)||(2863632-2863703)
chr5 (1-86)||(4173028-4173115)
chr5 (1-38)||(5005193-5005232)
chr5 (14-70)||(6458862-6458918)
chr5 (1-36)||(16292204-16292240)
chr5 (1-36)||(41210468-41210504)
chr5 (1-38)||(43153012-43153051)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-61)||(17118-17180)
[»] chr6 (12 HSPs)
chr6 (1-61)||(2165229-2165291)
chr6 (1-61)||(2176862-2176924)
chr6 (1-65)||(6997475-6997541)
chr6 (1-40)||(23633275-23633314)
chr6 (1-65)||(19713074-19713140)
chr6 (1-40)||(32457202-32457243)
chr6 (1-40)||(34021122-34021163)
chr6 (1-86)||(608565-608652)
chr6 (1-86)||(9395241-9395328)
chr6 (1-38)||(11742936-11742975)
chr6 (1-38)||(12044410-12044449)
chr6 (1-38)||(16743218-16743257)
[»] scaffold0058 (1 HSPs)
scaffold0058 (1-86)||(3023-3110)
[»] scaffold0024 (1 HSPs)
scaffold0024 (14-86)||(48749-48821)
[»] scaffold0508 (1 HSPs)
scaffold0508 (1-40)||(11486-11527)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-38)||(36820-36857)
[»] scaffold0501 (1 HSPs)
scaffold0501 (3-40)||(10466-10505)
[»] scaffold0119 (1 HSPs)
scaffold0119 (1-86)||(23193-23280)
[»] scaffold0014 (1 HSPs)
scaffold0014 (14-86)||(145142-145214)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 147 - 401
Target Start/End: Complemental strand, 52037993 - 52037738
Alignment:
Q  147 tcaacttcaaaggtttttgtctacaggtaaaaacaacaagttt-ggaatcaaaaattacaattttgacccgataatgtttttggaggaacataaaattta 245  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52037993 tcaaattcaaaggtttttgtctacaggtaaaaacaacaagttttggaatcaaaaattacaattttgacccgataatgtttttggaggaacataaaattta 52037894  T
Q  246 aatatttttgccagtgctttttaaactcaaagatcttctatatcatcaatcggagcattattctctcccaatatatttctctcataacnnnnnnngggat 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  52037893 aatatttttgccagtgctttttaaactcaaagatcttctatatcatcaatcggagcattattctctcccaatatatttctctcataacaaaaaaagggat 52037794  T
Q  346 attctcttgaaaaagtaaacctccaaatatttgccctacgcgccataacaccaaac 401  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  52037793 attctcttgaaaaagtaaacctccaaatatttgccctacccgccataacatcaaac 52037738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 48117416 - 48117503
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  48117416 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgt 48117503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 50745629 - 50745700
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataatt 70  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | |||||||||||||| ||||    
T  50745629 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaaatt 50745700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2935502 - 2935415
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||| ||||||||||| | ||||| ||| |||||||||| ||| | |||||  |||||||||||    
T  2935502 ctctcttcctttttctctctccattgttattgaccaatgagaagaaagaataacaaggttgtcacaaaagttgtactaaaagagttgt 2935415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 14839036 - 14838949
Alignment:
Q  1 ctctcttcctttttct--ctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| |||||||||||  |||||||||||||||||||| ||| || | || | |||||||||||||| |||||||  |||||||||||    
T  14839036 ctcttttcctttttctctctctattgtttttgaccaataaaaagagaacacaacaaggttgtcccaaaaattgtaccaaaagagttgt 14838949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30664583 - 30664618
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  30664583 ctctcttcctttttctctctattgtttttgaccaat 30664618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41957595 - 41957634
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  41957595 ctctcttcctttttctctccattgtttttgaccaatgaaa 41957634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 9159024 - 9158940
Alignment:
Q  4 tcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| ||||||||||||  |||||||||||||||||||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  9159024 tctttctttttctctcttcattgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgt 9158940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36925817 - 36925862
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaatgaaag 46  Q
    |||||||||||||||||||| ||||||||||||||| ||| |||||    
T  36925817 ctctcttcctttttctctctcttgtttttgaccaataaaaagaaag 36925862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 32656055 - 32656102
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaag 46  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||    
T  32656055 ctctcttcctttttctctctccattgtttttgaccaatgaaaagaaag 32656102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43894976 - 43894905
Alignment:
Q  1 ctctcttcctttttctct--ctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataatt 70  Q
    |||||||| |||||||||  |||||||||||||||||||||| || |||| | ||| |||||||||| ||||    
T  43894976 ctctcttcttttttctctatctattgtttttgaccaatgaaaagagagcacaacaaagttgtcccaaaaatt 43894905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 49361828 - 49361741
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||| ||||||||||| | ||||| ||| ||| |||||| ||| | |||||  |||||||||||    
T  49361828 ctctcttcctttttctctctccattgttattgaccaatgagaagaaagaataacaaagttgtcacaaaagttgtactaaaagagttgt 49361741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 1834586 - 1834676
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtaca 89  Q
    |||||||||||||||||  |||||||||||||||||||||||  | || |||  ||| ||||||||| | || | ||||||| ||||||||    
T  1834586 ctctcttcctttttctctctctattgtttttgaccaatgaaagaagagaataataagattgtcccaaaagttatttaaaaagggttgtaca 1834676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1901917 - 1901855
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || || | || |||||||||    
T  1901917 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaggaaggttgtc 1901855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1911363 - 1911301
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || || | || |||||||||    
T  1911363 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaggaaggttgtc 1911301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7039220 - 7039185
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  7039220 ctctcttcttttttctctctattgtttttgaccaat 7039185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 29525313 - 29525348
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29525313 ctctctttctttttctctctattgtttttgaccaat 29525348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35368691 - 35368757
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    |||||||||||||||||  |||||||||||| |||||||||| || |||| | |||| |||||||||    
T  35368691 ctctcttcctttttctctctctattgttttttaccaatgaaaagagagcacaacaagattgtcccaa 35368757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 38692315 - 38692280
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  38692315 ctctcttcgtttttctctctattgtttttgaccaat 38692280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 40419634 - 40419599
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  40419634 ctctcttcctttctctctctattgtttttgaccaat 40419599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47849752 - 47849791
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  47849752 ctctctttctttttctctccattgtttttgaccaatgaaa 47849791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 51032615 - 51032580
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  51032615 ctctcttcctttttctctctattatttttgaccaat 51032580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25959533 - 25959492
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  25959533 ctctcttcctttttctctctccattgtttttgaccaatgaaa 25959492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26279964 - 26280005
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  26279964 ctctcttcctttttctctctccattgtttttgaccaatgaaa 26280005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28269886 - 28269927
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  28269886 ctctcttcctttttctctctccattgtttttgaccaatgaaa 28269927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31017385 - 31017343
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaatga 43  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||    
T  31017385 ctctcttcctttttctctctattattttttaccaatcaaatga 31017343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33007440 - 33007481
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  33007440 ctctcttcctttttctctctccattgtttttgaccaatgaaa 33007481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36869828 - 36869787
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  36869828 ctctcttcctttttctctctccattgtttttgaccaatgaaa 36869787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41877602 - 41877561
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  41877602 ctctcttcctttttctctctccattgtttttgaccaatgaaa 41877561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 46473208 - 46473249
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  46473208 ctctcttcctttttctctctccattgtttttgaccaatgaaa 46473249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 51672943 - 51672984
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  51672943 ctctcttcctttttctctctccattgtttttgaccaatgaaa 51672984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 29846879 - 29846795
Alignment:
Q  4 tcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||||||  ||||||||| ||||| |||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  29846879 tcttcctttttctctctccattgttttttaccaacgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgt 29846795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 8066437 - 8066476
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  8066437 ctcttcctttttctctctccattgtttttgaccaatgaaa 8066476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21481844 - 21481883
Alignment:
Q  1 ctctcttcctttttct--ctctattgtttttgaccaatga 38  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  21481844 ctctcttcctttttctgtctctattgtttttgaccaatga 21481883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 37215220 - 37215181
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  37215220 ctcttcctttttctctctccattgtttttgaccaatgaaa 37215181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 48205125 - 48205212
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||| |||| |||||| | ||||  ||| |||||||||| ||| | |||||  |||||||||||    
T  48205125 ctctcttcctttttctctctacattgttattgatcaatgagaagaaaaaataacaaggttgtcacaaaagttgtactaaaagagttgt 48205212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 48490504 - 48490417
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||||||| |  |||||| ||||||||||| | ||||  ||| |||| ||||| ||| | |||||| |||||||||||    
T  48490504 ctctcttcctttttctctatccattgttattgaccaatgagaagaaaaaataacaagattgtcacaaaagttgtattaaaagagttgt 48490417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 51385431 - 51385344
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||| |||||||||||  |||||||||||||||||||| || || | | || ||||||||||| | |||||  |||| ||||||    
T  51385431 ctctcttcttttttctctctccattgtttttgaccaatgaaaagagagaacaacatggttgtcccaaaagttgtactaaaatagttgt 51385344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 51410888 - 51410927
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  51410888 ctcttcctttttctctctccattgtttttgaccaatgaaa 51410927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 24616440 - 24616517
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtacata 91  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||    
T  24616440 tctctctattgtttttgaccaatgaaatgaaagaatagcaaggttgtcccaataattgtctaaaaagggttgtacata 24616517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 23709056 - 23709143
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||||||  ||||||||| ||||||||||||| || |||||| |||||||||||||| |||||||  |||| ||||||    
T  23709056 ctctcttcctttttctctctctattgttcttgaccaatgaaaagagagcataacaaggttgtcccaaaaattgtagcaaaaaagttgt 23709143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22836130 - 22836043
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | ||||||| |||||| |||||||  |||| ||||||    
T  22836130 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagcacaacaaggttatcccaaaaattgtagcaaaaaagttgt 22836043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 34247854 - 34247944
Alignment:
Q  1 ctctcttcctttttctct--ctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtaca 89  Q
    ||||||||||||||||||  |||||||||||||||||||||| || || | | |||||||||||||| | |||| | ||||| ||||||||    
T  34247854 ctctcttcctttttctctttctattgtttttgaccaatgaaaagagagaacaacaaggttgtcccaaaagttgtctcaaaagggttgtaca 34247944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 21649159 - 21649074
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||| ||| |||||||||||| ||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  21649159 ctctcttcctttttctctccattatttttgaccaataaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgt 21649074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1422693 - 1422606
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||| ||||||||||||  ||||||||||||||||||||  | || ||| |||||||||||||| | |||||| |||| ||||||    
T  1422693 ctctctttctttttctctctccattgtttttgaccaatgaaaaaatagaataacaaggttgtcccaaaagttgtatcaaaatagttgt 1422606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22203206 - 22203119
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||||||| |  |||||||||||||||| ||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  22203206 ctctcttcctttttctctttccattgtttttgaccaatcaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgt 22203119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25430726 - 25430813
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||||||  ||||||||||||||||||| | | || | || | |||||||||||||| | |||||  |||||||||||    
T  25430726 ctctcttcctttttctctctctattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgt 25430813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 37471723 - 37471810
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||| |||||||||||  |||||||||||||||||||| || |||| | |||| ||||||||| | |||||  |||| ||||||    
T  37471723 ctctcttcttttttctctctccattgtttttgaccaatgaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgt 37471810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 41776270 - 41776342
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||| |||||||||||||||||||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  41776270 tctctccattgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgt 41776342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 1796563 - 1796625
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || || | || |||||||||    
T  1796563 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaggaaggttgtc 1796625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26871126 - 26871165
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  26871126 ctctcttcttttttctctccattgtttttgaccaatgaaa 26871165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 295626 - 295667
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatgaaa 40  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  295626 ctctcttcctttttctctctctattgtttttgaccaatgaaa 295667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 426181 - 426222
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  426181 ctctcttcctttttctctctccattgtttttgaccaatgaaa 426222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5502440 - 5502481
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  5502440 ctctcttcctttttctctctccattgtttttgaccaatgaaa 5502481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9001005 - 9000964
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  9001005 ctctcttcctttttctctctccattgtttttgaccaatgaaa 9000964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22767210 - 22767251
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  22767210 ctctcttcctttttctctctccattgtttttgaccaatgaaa 22767251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24946082 - 24946123
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  24946082 ctctcttcctttttctctctccattgtttttgaccaatgaaa 24946123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28927761 - 28927802
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  28927761 ctctcttcctttttctctctccattgtttttgaccaatgaaa 28927802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 40
Target Start/End: Original strand, 24503009 - 24503038
Alignment:
Q  11 ttttctctctattgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||||||||||||    
T  24503009 ttttctctctattgtttttgaccaatgaaa 24503038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12045644 - 12045605
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  12045644 ctctcttcctttttctctctccattgtttttgaccaatga 12045605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 30943815 - 30943783
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaag 46  Q
    ||||||||||||||||||||||| |||||||||    
T  30943815 tctctctattgtttttgaccaatcaaatgaaag 30943783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 33692812 - 33692872
Alignment:
Q  10 tttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataatt 70  Q
    |||||||||| ||| |||||||||||||||| || |||| | ||| |||||||||| ||||    
T  33692812 tttttctctccattatttttgaccaatgaaaagagagcacaacaaagttgtcccaaaaatt 33692872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34838261 - 34838174
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||| | | || | || | ||||||||||| || | |||||  |||||||||||    
T  34838261 ctctcttcctttttctctctctattgtttttgaccaataagaagagaacacaacaaggttgtcctaaaagttgtaccaaaagagttgt 34838174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 33914329 - 33914233
Alignment:
Q  1 ctctcttccttttt--ctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtacatatacc 95  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||    
T  33914329 ctctcttcctttttatctctctattgtttttaaccaatgaaatgaaagaatagcaaggttgtcccaatagttgtctaaaaagggttgtacatatacc 33914233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 41170852 - 41170946
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtacatata 93  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||| | |||| ||||||  ||||||||||||    
T  41170852 ctctcttcctttttctctctctattgtttttgaccaatgaaatgaaagaatagcaaggttgtcccaaaagttgtctaaaaatggttgtacatata 41170946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 43864113 - 43864207
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtacatata 93  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||  |||||||||||||| ||||| |||| ||||||| ||||||||||||    
T  43864113 ctctcttcctttttctctctctattgattttgaccaatgaaatgaaaaaatagcaaggttgtctcaatagttgtctaaaaagggttgtacatata 43864207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 53781828 - 53781762
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    |||||||| |||||||||||  |||||||||||||||||||| || |||||| ||||||||||||||    
T  53781828 ctctcttcttttttctctctccattgtttttgaccaatgaaaagagagcataacaaggttgtcccaa 53781762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1728078 - 1728006
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgta 73  Q
    ||||||| |||| ||||||||||||||||||||||| | | |||| || | |||||||||||||| |||||||    
T  1728078 ctctctttctttctctctctattgtttttgaccaataagaagaaaacacaacaaggttgtcccaaaaattgta 1728006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 4878047 - 4878134
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||||||| |  |||||||||||||||||||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  4878047 ctctcttcctttttctctttccattgtttttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgt 4878134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 8614277 - 8614349
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||||| | | |||| || | |||||||||||||| ||||||| ||||| ||||||    
T  8614277 tctctctattgtttttgaccaataagaagaaaacacaacaaggttgtcccaaaaattgtacaaaaaaagttgt 8614349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29577427 - 29577348
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaa 78  Q
    |||||||| |||||||||||  |||||||||||||||||||| || || | | |||||||||||||| ||||||| ||||    
T  29577427 ctctcttcatttttctctctccattgtttttgaccaatgaaaagagagaacaacaaggttgtcccaaaaattgtacaaaa 29577348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 30042214 - 30042254
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaat 41  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  30042214 ctctcttcttttttctctctattgtttttgaccaatgaaat 30042254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28676143 - 28676104
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  28676143 ctctcttcctttttctctccattgtttttgaccaatgaaa 28676104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 36110224 - 36110301
Alignment:
Q  9 ctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| |||||||||| |||||||||||| | | || | || | |||||||||||||| |||||||| |||||||||||    
T  36110224 ctttctctctctattatttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtatcaaaagagttgt 36110301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 3475948 - 3475995
Alignment:
Q  1 ctctcttcctttt--tctctctattgtttttgaccaatgaaatgaaag 46  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||||    
T  3475948 ctctcttccttttactctctctattgtttttgaccaatgaaaagaaag 3475995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33776804 - 33776757
Alignment:
Q  1 ctctcttcctttttctct--ctattgtttttgaccaatgaaatgaaag 46  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||||    
T  33776804 ctctcttcctttttctctttctattgtttttgaccaattaaatgaaag 33776757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47998674 - 47998721
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaag 46  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||    
T  47998674 ctctcttcctttttctctctccattgtttttgaccaatgaaaagaaag 47998721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32621709 - 32621748
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    ||||||||||| ||||||| ||||||||||||||||||||    
T  32621709 ctctcttccttattctctccattgtttttgaccaatgaaa 32621748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 33776975 - 33777061
Alignment:
Q  2 tctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||||||||  |||||||||||||||| ||| || || | | ||||||| |||||| |||||||  |||| ||||||    
T  33776975 tctcttcctttttctctcttcattgtttttgaccaataaaaagagagaacaacaaggttatcccaaaaattgtaccaaaatagttgt 33777061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34974535 - 34974574
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  34974535 ctctcttcttttttctctccattgtttttgaccaatgaaa 34974574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 36081906 - 36081981
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtaca 89  Q
    ||||||||||||||||||||||||| |  | || |||  ||||||||||||| | |||| ||||||| ||||||||    
T  36081906 tctctctattgtttttgaccaatgagagaagagaataataaggttgtcccaaaagttgtttaaaaagggttgtaca 36081981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 52891843 - 52891804
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  52891843 ctctctttctttttctctccattgtttttgaccaatgaaa 52891804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4896491 - 4896450
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  4896491 ctctcttcctttttctctctccattgtttttgaccaatgaaa 4896450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9162146 - 9162187
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  9162146 ctctcttcctttttctctctccattgtttttgaccaatgaaa 9162187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 28899206 - 28899133
Alignment:
Q  2 tctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgta 73  Q
    |||||| ||||||||||||  ||||| |||||||||| ||| ||||| | | |||||||||||||| |||||||    
T  28899206 tctcttactttttctctctccattgtgtttgaccaataaaaagaaagaacatcaaggttgtcccaaaaattgta 28899133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46794492 - 46794451
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  46794492 ctctcttcctttttctctctccattgtttttgaccaatgaaa 46794451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 19807406 - 19807322
Alignment:
Q  4 tcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||||||  ||||||||||| |||| | | || | || | |||||||||||||| ||||||| ||||| ||||||    
T  19807406 tcttcctttttctctctctattgtttttgatcaataagaagatatcacaacaaggttgtcccaaaaattgtacaaaaaaagttgt 19807322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 38960641 - 38960564
Alignment:
Q  9 ctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| |||||||||| |||||||||||| | | || | || | |||| ||||||||| |||||||| |||||||||||    
T  38960641 ctttctctctctattatttttgaccaataagaagagaacacaacaagattgtcccaaaaattgtatcaaaagagttgt 38960564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 43307355 - 43307275
Alignment:
Q  1 ctctcttcctttttct--ctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaa 79  Q
    ||||||| ||||||||  ||||||||||||| |||||| ||| || |||| | ||||||| |||||| ||||||| |||||    
T  43307355 ctctctttctttttctctctctattgtttttaaccaataaaaagagagcacaacaaggttatcccaaaaattgtaaaaaaa 43307275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18874915 - 18874876
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  18874915 ctctcttcctttttctctctccattgtttttgaccaatga 18874876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34027976 - 34028015
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  34027976 ctctcttcctttttctctctccattgtttttgaccaatga 34028015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 35332793 - 35332825
Alignment:
Q  8 cctttttctctctattgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||||||||| |||||    
T  35332793 cctttttctctctattgtttttgaccagtgaaa 35332825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 38952771 - 38952810
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  38952771 ctcttcctttttctctctccattgtttttgaccaatgaaa 38952810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 45678343 - 45678430
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||| ||| || || | | ||||||||| |||| | |||||  |||| ||||||    
T  45678343 ctctcttcctttttctctctccattgtttttgaccaataaaaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgt 45678430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 46355282 - 46355195
Alignment:
Q  1 ctctcttcctttttct--ctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||| ||||||||  |||||||||| ||||||||||| |  | || ||| ||| |||||||||| | ||||| ||||||||||||    
T  46355282 ctctctttctttttctctctctattgttattgaccaatgagaaaagagaataccaaagttgtcccaaaagttgtacaaaaagagttgt 46355195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 50291377 - 50291449
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||||| | | || | || | |||||||||||||| | |||||  |||||||||||    
T  50291377 tctctctattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgt 50291449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 51107433 - 51107362
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataatt 70  Q
    |||||||||||||||| |||  |||||||||||||||||||| || ||||   ||||||||| |||| ||||    
T  51107433 ctctcttcctttttctgtctccattgtttttgaccaatgaaaagagagcacgacaaggttgttccaaaaatt 51107362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27529609 - 27529671
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtccc 63  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||||||||||    
T  27529609 ctctcttcctttttctctccattgtttttgaccaatgaaaagaaagcacaacaaggttgtccc 27529671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35203740 - 35203666
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgta 73  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | |||||||||||||| |||||||    
T  35203740 ctctcttcctttttctctcttcattgtttttgaccaatgaaaagatagcacaacaaggttgtcccaaaaattgta 35203666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 22296120 - 22296033
Alignment:
Q  1 ctctcttcctttttctctctat--tgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||||  || |||||||||||||||  | |||| | |||||||||||||| ||||||| ||||| ||||||    
T  22296120 ctctcttcctttttctctctatattgattttgaccaatgaaaaaagagcacaacaaggttgtcccaaaaattgtagaaaaaaagttgt 22296033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 6885460 - 6885384
Alignment:
Q  10 tttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||| ||||||||||| |||||||| || |||||| ||| ||||||| || |||||||| |||| ||||||    
T  6885460 tttttctctccattgtttttgatcaatgaaaagagagcataacaaagttgtcctaaaaattgtattaaaaaagttgt 6885384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35705908 - 35705821
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | |||| ||||||||| | |||||  |||| ||||||    
T  35705908 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgt 35705821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 37076744 - 37076820
Alignment:
Q  10 tttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||| |||||| ||||||||||| | ||||| ||| |||||||||| ||| |||||||  |||||||||||    
T  37076744 tttttctctccattgttattgaccaatgagaagaaagaataacaaggttgtcacaaaaattgtactaaaagagttgt 37076820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 43205173 - 43205260
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | ||| |||||||||| | |||||  |||| ||||||    
T  43205173 ctctcttcctttttctctcttcattgtttttgaccaatgaaaagagagcacaacaaagttgtcccaaaagttgtagcaaaaaagttgt 43205260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 45202123 - 45202036
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  ||||||||||| |||||||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  45202123 ctctcttcctttttctctctccattgtttttgatcaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgt 45202036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17999824 - 17999890
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    ||||||||||||||||||||  |||||||||||||||||||| || | || | ||||||||||||||    
T  17999824 ctctcttcctttttctctctgcattgtttttgaccaatgaaaagatatcacaacaaggttgtcccaa 17999890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39454236 - 39454197
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  39454236 ctctcttcctttttctctccattgtttttgaccaatgaaa 39454197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 27538908 - 27538859
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtccc 63  Q
    |||||| |||||||||||||||||||| ||||||| | ||||||||||||    
T  27538908 tctctccattgtttttgaccaatgaaaagaaagcacaacaaggttgtccc 27538859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 12256996 - 12257068
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||||| | | |||| || | |||||||||||||| |||||||  |||| ||||||    
T  12256996 tctctctattgtttttgaccaataagaagaaaacacaacaaggttgtcccaaaaattgtaccaaaaaagttgt 12257068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35798289 - 35798360
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataatt 70  Q
    ||||||| ||||||||||||  ||||||||| |||||| ||| ||||||| | |||||||||||||| ||||    
T  35798289 ctctctttctttttctctctccattgtttttaaccaataaaaagaaagcacaacaaggttgtcccaaaaatt 35798360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 38777974 - 38778037
Alignment:
Q  4 tcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    |||||||||||||||||  ||||||||| ||| ||||||||| |||| | ||||||||||||||    
T  38777974 tcttcctttttctctctccattgttttttacccatgaaatgagagcacaacaaggttgtcccaa 38778037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 40115595 - 40115682
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||| ||||  |||||||||||  ||||||| || |||| | |||||||||||||| |||||||  |||| ||||||    
T  40115595 ctctcttcctttttcgctctccattgtttttgatgaatgaaaagagagcacaacaaggttgtcccaaaaattgtagtaaaaaagttgt 40115682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 44897721 - 44897793
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||| ||||||||||| ||| || | || | |||||||||||||| | |||||| |||||||||||    
T  44897721 tctctctattgattttgaccaataaaaagagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgt 44897793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32755760 - 32755795
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  32755760 ctctcttcctttttttctctattgtttttgaccaat 32755795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5067632 - 5067591
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  5067632 ctctcttcctttttctctctccattgtttttgaccaatgaaa 5067591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5167733 - 5167692
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  5167733 ctctcttcctttttctctctccattgtttttgaccaatgaaa 5167692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11229312 - 11229271
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  11229312 ctctcttcctttttctctctccattgtttttgaccaatgaaa 11229271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 14140327 - 14140289
Alignment:
Q  2 tctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    ||||| |||||||||||| ||||||||||||||||||||    
T  14140327 tctctacctttttctctccattgtttttgaccaatgaaa 14140289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23344980 - 23344939
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  23344980 ctctcttcctttttctctctctattgtttttgaccaatgaaa 23344939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 37109360 - 37109326
Alignment:
Q  2 tctcttcctttttctctctattgtttttgaccaat 36  Q
    |||||| ||||||||||||||||||||||||||||    
T  37109360 tctctttctttttctctctattgtttttgaccaat 37109326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42081117 - 42081158
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatgaaa 40  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  42081117 ctctcttcctttttctctctctattgtttttgaccaatgaaa 42081158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43725285 - 43725326
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  43725285 ctctcttcctttttctctctccattgtttttgaccaatgaaa 43725326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30340073 - 30340161
Alignment:
Q  1 ctctcttcctttttctctct--attgtttt-tgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||| |||||||||| | || || | | |||||||||||||| | |||||  |||||||||||    
T  30340073 ctctcttcctttttctctctctattgttttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaagagttgt 30340161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 32688534 - 32688494
Alignment:
Q  2 tctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  32688534 tctcttcctttttctctctccattgtttttgaccaatgaaa 32688494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 1277822 - 1277898
Alignment:
Q  10 tttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||| ||||||||||| | || || ||| |||| |||||| || | || || ||||||||||||    
T  1277822 tttttctctctattgttattgaccaatgagaagagagaatatcaagattgtcctaaaagttatacaaaaagagttgt 1277898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4263855 - 4263816
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  4263855 ctctcttcctttttctctctccattgtttttgaccaatga 4263816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 7086113 - 7086074
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  7086113 ctcttcctttttctctctctattgtttttgaccaatgaaa 7086074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 11828796 - 11828748
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcc 62  Q
    |||||| |||||||||||||||||||| || |||| | |||||||||||    
T  11828796 tctctccattgtttttgaccaatgaaaagagagcacaacaaggttgtcc 11828748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 13104561 - 13104600
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  13104561 ctcttcctttttctctctccattgtttttgaccaatgaaa 13104600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 16463383 - 16463459
Alignment:
Q  10 tttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||||||||| | | || |||| | |||| ||||||||| | |||||  | |||||||||    
T  16463383 tttttctctctattgtttttgaccaataagaagagagcacaacaagattgtcccaaaagttgtaccataagagttgt 16463459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 32750080 - 32750119
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  32750080 ctcttcctttttctctctccattgtttttgaccaatgaaa 32750119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 34373099 - 34373127
Alignment:
Q  10 tttttctctctattgtttttgaccaatga 38  Q
    |||||||||||||||||||||||||||||    
T  34373099 tttttctctctattgtttttgaccaatga 34373127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35008092 - 35008005
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||| ||||||||| |  ||||| |||||||||||||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  35008092 ctctcttcttttttctctatccattgtgtttgaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagtaaaaaagttgt 35008005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 22331202 - 22331128
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgta 73  Q
    ||||||||||||||||||||  ||||||||| |||||||||| || |||||| |||||||||||||| |||||||    
T  22331202 ctctcttcctttttctctctccattgttttttaccaatgaaaagagagcataacaaggttgtcccaaaaattgta 22331128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 38197741 - 38197828
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | |||| ||||||||| | |||||  |||| ||||||    
T  38197741 ctctcttcctttttctctctccattgtttttgaccaatgaaaagatagcacaacaagattgtcccaaaagttgtagcaaaaaagttgt 38197828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 47764265 - 47764300
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  47764265 ctctcttcctttttctctctattgtttttgaccaat 47764300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4971370 - 4971415
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaatgaaag 46  Q
    ||||||||||||||||||| ||| |||||||||||| |||||||||    
T  4971370 ctctcttcctttttctctccattatttttgaccaataaaatgaaag 4971415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21588916 - 21588879
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatga 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  21588916 ctctcttcctttttctctccattgtttttgaccaatga 21588879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30391228 - 30391265
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatga 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  30391228 ctctcttcctttttctctctattgttttggaccaatga 30391265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 12141964 - 12142011
Alignment:
Q  1 ctctcttcctttttctct--ctattgtttttgaccaatgaaatgaaag 46  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||    
T  12141964 ctctcttcctttttctctttctattgtttttgaccaatgaaaagaaag 12142011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17039237 - 17039308
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataatt 70  Q
    |||||||| |||||||||||  |||||||||||||||||||| || | || | |||||||||||||| ||||    
T  17039237 ctctcttcatttttctctctgcattgtttttgaccaatgaaaagagaacacaacaaggttgtcccaaaaatt 17039308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 25272671 - 25272758
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||| ||||||||| | | ||||| ||| |||||||||| ||| | |||||  |||||||||||    
T  25272671 ctctcttcctttttctctctccattgttattgaccaataagaagaaagaataacaaggttgtcacaaaagttgtactaaaagagttgt 25272758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6822524 - 6822489
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6822524 ctctcttcctttttctctctattatttttgaccaat 6822489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 7295562 - 7295637
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtaca 89  Q
    ||||||||||||||||||||||||| | || || ||| ||||||||| |||| | |||| | |||| |||||||||    
T  7295562 tctctctattgtttttgaccaatgagaagagagaataacaaggttgttccaaaagttgtctcaaaaaagttgtaca 7295637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 18157176 - 18157114
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || || | || |||||||||    
T  18157176 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaggaaggttgtc 18157114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41077493 - 41077454
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  41077493 ctctcttccttcctctctctattgtttttgaccaatgaaa 41077454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5378707 - 5378748
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  5378707 ctctcttcctttttctctctccattgtttttgaccaatgaaa 5378748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5978659 - 5978700
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  5978659 ctctcttcctttttctctctccattgtttttgaccaatgaaa 5978700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25940658 - 25940617
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  25940658 ctctcttcctttttctctctcaattgtttttgaccaatgaaa 25940617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31982137 - 31982178
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  31982137 ctctcttcctttttctctctccattgtttttgaccaatgaaa 31982178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42204717 - 42204676
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  42204717 ctctcttcctttttctctcttcattgtttttgaccaatgaaa 42204676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 43107692 - 43107753
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgt 60  Q
    |||||||| |||||||||||  |||||||||||||||||||| ||||| | || ||||||||    
T  43107692 ctctcttcttttttctctctccattgtttttgaccaatgaaaagaaagaaaaggaaggttgt 43107753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 45607104 - 45607145
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  45607104 ctctcttcctttttctctctccattgtttttgaccaatgaaa 45607145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 46148246 - 46148287
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  46148246 ctctcttcctttttctctctccattgtttttgaccaatgaaa 46148287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 47193007 - 47193048
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  47193007 ctctcttcctttttctctctccattgtttttgaccaatgaaa 47193048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 47945073 - 47945150
Alignment:
Q  9 ctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| |||||||||| |||||||||||| | | || | || | |||||||||||||| | |||||| |||||||||||    
T  47945073 ctttctctctctattatttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgt 47945150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 47950503 - 47950580
Alignment:
Q  9 ctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| |||||||||| |||||||||||| | | || | || | |||||||||||||| | |||||| |||||||||||    
T  47950503 ctttctctctctattatttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtatcaaaagagttgt 47950580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 1709379 - 1709451
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||||| ||| || | || | |||| ||||||||| |||| ||  |||||||||||    
T  1709379 tctctctattgtttttgaccaataaaaagagaacacaacaagattgtcccaaaaattataccaaaagagttgt 1709451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 2323388 - 2323420
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaag 46  Q
    ||||||||||||||||||||||||||| |||||    
T  2323388 tctctctattgtttttgaccaatgaaaagaaag 2323420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23034304 - 23034217
Alignment:
Q  1 ctctcttcctttttct--ctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||| |||||||  |||||||||||||||||||| | |  | |||| | |||||||||||||| | |||||  |||||||||||    
T  23034304 ctctcttcttttttctctctctattgtttttgaccaataagaaaagagcacaacaaggttgtcccaaaagttgtaccaaaagagttgt 23034217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 37848600 - 37848552
Alignment:
Q  10 tttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggtt 58  Q
    |||||||||| |||||||||||||||||||| || |||| | |||||||    
T  37848600 tttttctctccattgtttttgaccaatgaaaagagagcacaacaaggtt 37848552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 40108204 - 40108290
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  ||| || ||||||||||| | ||||| ||| |||||||||| ||| | |||||  |||||||||||    
T  40108204 ctctcttcctttttctctcttcattattattgaccaatgagaagaaagaataacaaggttgtcacaa-agttgtactaaaagagttgt 40108290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40693519 - 40693480
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  40693519 ctctcttcctttttctctctctattgtttttgaccaatga 40693480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 41538560 - 41538647
Alignment:
Q  1 ctctcttcctttttctct--ctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||| |||||||||  |||||||||||||||||| | | || | || | |||||||||||||| | |||||| |||||| ||||    
T  41538560 ctctcttcatttttctctttctattgtttttgaccaataagaagataacacaacaaggttgtcccaaaagttgtatcaaaagaattgt 41538647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43079623 - 43079584
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  43079623 ctctcttcctttttctctctccattgtttttgaccaatga 43079584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 49142508 - 49142421
Alignment:
Q  1 ctctcttcct--ttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||  ||||||||| |||||| ||||||||||| | ||||  ||| |||||||||| ||| | |||||  |||||||||||    
T  49142508 ctctcttcctttttttctctccattgttattgaccaatgagaagaaaaaataacaaggttgtcacaaaagttgtaataaaagagttgt 49142421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Original strand, 49314455 - 49314533
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtacatata 93  Q
    ||||| |||| ||||| |||||| ||||||||| ||||||||||||||||||||||| | |||||| ||||||| |||||    
T  49314455 tctctttattatttttaaccaataaaatgaaagaatagcaaggttgtcccaataattatctaaaaa-agttgtatatata 49314533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 48962066 - 48962167
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtacatataccaat 98  Q
    ||||||||||||||||||||  |||||||||||||||| | | || | || | |||||||||||||| |||||||  ||||||||||| || ||| ||||    
T  48962066 ctctcttcctttttctctctctattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtaccaaaagagttgttcaaatatcaat 48962165  T
Q  99 ac 100  Q
    ||    
T  48962166 ac 48962167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23399980 - 23399893
Alignment:
Q  1 ctctcttcctttttctct--ctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||  |||||||||||||||||| | | || | || | |||||||||||||| |||||||  |||||||||||    
T  23399980 ctctcttcctttttctctttctattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtaccaaaagagttgt 23399893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 41564871 - 41564784
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||| | | || | || | |||||||||||||| |||||||  |||||||||||    
T  41564871 ctctcttcctttttctctctgtattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtaccaaaagagttgt 41564784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12972695 - 12972660
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  12972695 ctctcttcctttttctctctattgtttttgaccaat 12972660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 48689636 - 48689701
Alignment:
Q  1 ctctcttcctttttctctctattg-tttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    |||||||||||||||||||||||| ||||||| |||||||| || || | | ||||||||||||||    
T  48689636 ctctcttcctttttctctctattgttttttgatcaatgaaaagagagaacaacaaggttgtcccaa 48689701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Original strand, 1100308 - 1100384
Alignment:
Q  10 tttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||| |||||| ||||||||||| | ||||| ||| |||||||||| ||| | |||||  |||||||||||    
T  1100308 tttttctctcaattgttattgaccaatgagaagaaagaataacaaggttgtcacaaaagttgtactaaaagagttgt 1100384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 3919380 - 3919468
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgtaca 89  Q
    |||||||  ||||| ||||||||||||||||||||||| |  | || |||  || |||||||||| |||||| ||||||| ||||||||    
T  3919380 ctctctttatttttttctctattgtttttgaccaatgagagaagagaataataaagttgtcccaaaaattgtttaaaaagggttgtaca 3919468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 37947211 - 37947124
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||||| | || || | | |||||||||||||| | |||||  |||| ||||||    
T  37947211 ctctcttcctttttctctctccattgtttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaacaaaatagttgt 37947124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 40240102 - 40240015
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| ||||||||||||| |  |||||||||||||||||||| || |||| | |||||||||||||| | |||||  |||| ||||||    
T  40240102 ctcttttcctttttctctatccattgtttttgaccaatgaaaagatagcacaacaaggttgtcccaaaagttgtagcaaaaaagttgt 40240015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 19651490 - 19651525
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19651490 ctctcttcctttttctctccattgtttttgaccaat 19651525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25098779 - 25098717
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || || | || |||||||||    
T  25098779 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaggaaggttgtc 25098717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 25988975 - 25988940
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25988975 ctctcttcctttttctctccattgtttttgaccaat 25988940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27352710 - 27352772
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || || | || |||||||||    
T  27352710 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagaaaagaaaggttgtc 27352772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36930745 - 36930710
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaat 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  36930745 ctctcttcctttttctctccattgtttttgaccaat 36930710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40052988 - 40053027
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  40052988 ctctcttcttttttctctctattatttttgaccaatgaaa 40053027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 50460703 - 50460629
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgta 73  Q
    ||||||||||||||||||||  |||||||||||||||| ||| |||| || | |||  ||||||||| |||||||    
T  50460703 ctctcttcctttttctctctctattgtttttgaccaataaaaagaaaacacaacaaaattgtcccaaaaattgta 50460629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4604609 - 4604650
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  4604609 ctctcttcctttttctctctccattgtttttgaccaatgaaa 4604650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28253095 - 28253136
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  28253095 ctctcttcctttttctctctccattgtttttgaccaatgaaa 28253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 30631836 - 30631795
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  30631836 ctctcttcctttttctctctccattgtttttgaccaatgaaa 30631795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 35846310 - 35846269
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  35846310 ctctcttcctttttctctctccattgtttttgaccaatgaaa 35846269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40596045 - 40596004
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  40596045 ctctcttcctttttctctctccattgtttttgaccaatgaaa 40596004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40610309 - 40610350
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  40610309 ctctcttcctttttctctctccattgtttttgaccaatgaaa 40610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43612073 - 43612032
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  43612073 ctctcttcctttttctctctccattgtttttgaccaatgaaa 43612032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45740535 - 45740494
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  45740535 ctctcttcctttttctctctccattgtttttgaccaatgaaa 45740494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 47059881 - 47059840
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  47059881 ctctcttcctttttctctctccattgtttttgaccaatgaaa 47059840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 48390065 - 48389999
Alignment:
Q  4 tcttcctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataatt 70  Q
    |||| ||||||||||||||||||||| |||||| ||| || | || ||||| |||||||||| ||||    
T  48390065 tctttctttttctctctattgtttttaaccaataaaaagataacacagcaaagttgtcccaaaaatt 48389999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 50659183 - 50659142
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  50659183 ctctcttcctttttctctctccattgtttttgaccaatgaaa 50659142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51339691 - 51339650
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  51339691 ctctcttcctttttctctctccattgtttttgaccaatgaaa 51339650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18959084 - 18959124
Alignment:
Q  1 ctctcttcctttt-tctctctattgtttttgaccaatgaaa 40  Q
    ||||||||||||| |||||| ||||||||||||||||||||    
T  18959084 ctctcttccttttctctctccattgtttttgaccaatgaaa 18959124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30414944 - 30415031
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||||||  ||||||||||||||||||| | | || | || | |||| ||||||||| | |||||  |||||||||||    
T  30414944 ctctcttcctttttctctctctattgtttttgaccaataagaagagaacacaacaagattgtcccaaaagttgtaccaaaagagttgt 30415031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 31436902 - 31436941
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  31436902 ctcttcctttttctctctccattgtttttgaccaatgaaa 31436941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 39010896 - 39010935
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  39010896 ctcttcctttttctctctccattgtttttgaccaatgaaa 39010935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48325302 - 48325341
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  48325302 ctctcttcctttttctctctccattgtttttgaccaatga 48325341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 48872462 - 48872521
Alignment:
Q  4 tcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    |||||||||||||||||  |||||||||||||||||||| || || | || |||||||||    
T  48872462 tcttcctttttctctctccattgtttttgaccaatgaaaagagagaaaaggaaggttgtc 48872521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 50796082 - 50796168
Alignment:
Q  1 ctctcttcctttt--tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||||||||  |||||||||| || |||||||||||||  | || ||| ||||||||||||||   ||||| ||||||||||||    
T  50796082 ctctcttcctttttctctctctattattattgaccaatgaaa-aagagaatatcaaggttgtcccaaatgttgtacaaaaagagttgt 50796168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 39032585 - 39032508
Alignment:
Q  9 ctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| ||||||||||||||||||||||| | | || | || | |||||||||||||| |||||||| |||||||||||    
T  39032585 ctttctctctctattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtatcaaaagagttgt 39032508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 42364509 - 42364575
Alignment:
Q  1 ctctcttcctttttctctctat--tgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    ||||||||||||||||||||||  |||||||||||||||||| || | || | ||||||||||||||    
T  42364509 ctctcttcctttttctctctatattgtttttgaccaatgaaaagataacacaacaaggttgtcccaa 42364575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9957192 - 9957105
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||| ||||||||| | | ||||| |||  ||||||||| ||| |||||||  |||||||||||    
T  9957192 ctctcttcctttttctctctccattgttattgaccaattagaagaaagaataataaggttgtcacaaaaattgtactaaaagagttgt 9957105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12718371 - 12718324
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaag 46  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||    
T  12718371 ctctcttcctttttctctctccattgtttttgaccaatgaaaagaaag 12718324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 12779597 - 12779550
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaag 46  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||    
T  12779597 ctctcttcctttttctctctccattgtttttgaccaatgaaaagaaag 12779550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14126496 - 14126560
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    |||| ||||||||||||||||||||||||||||||| | | || | || | ||||||||||||||    
T  14126496 ctcttttcctttttctctctattgtttttgaccaataagaagagaacacatcaaggttgtcccaa 14126560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 35595977 - 35595890
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||| |||||||||||  ||||||||||||||||||||  | |||| | |||| ||||||||| |||||||  |||| ||||||    
T  35595977 ctctcttcttttttctctctccattgtttttgaccaatgaaaaaagagcacaacaagattgtcccaaaaattgtaataaaaaagttgt 35595890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 91295 - 91357
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || || | || |||||||||    
T  91295 ctctcttcctttttctctcttcattgtttttgaccaatgaaaagagagaaaagaaaggttgtc 91357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 12891087 - 12891021
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    |||||||||||||||||| |  ||||||||||| |||||||| || |||| | ||||||||||||||    
T  12891087 ctctcttcctttttctctttccattgtttttgatcaatgaaaagagagcacaacaaggttgtcccaa 12891021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 125183 - 125213
Alignment:
Q  10 tttttctctctattgtttttgaccaatgaaa 40  Q
    |||||||||||||||||||||||||||||||    
T  125183 tttttctctctattgtttttgaccaatgaaa 125213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9636149 - 9636108
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  9636149 ctctcttcctttttctctctccattgtttttgaccaatgaaa 9636108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9714127 - 9714086
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  9714127 ctctcttcctttttctctctccattgtttttgaccaatgaaa 9714086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 9940134 - 9940219
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagtt 84  Q
    ||||||| ||||||||||||  |||||||||||||||||||| || || | | ||| ||||||| || |||||||| |||| ||||    
T  9940134 ctctctttctttttctctcttaattgtttttgaccaatgaaaagagagaacaacaaagttgtcctaaaaattgtatcaaaatagtt 9940219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19376123 - 19376082
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  19376123 ctctcttcctttttctctctccattgtttttgaccaatgaaa 19376082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34381092 - 34381133
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  34381092 ctctcttcctttttctctctccattgtttttgaccaatgaaa 34381133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39595354 - 39595395
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  39595354 ctctcttcctttttctctctccattgtttttgaccaatgaaa 39595395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42909799 - 42909840
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  42909799 ctctcttcctttttctctctccattgtttttgaccaatgaaa 42909840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 3031917 - 3031985
Alignment:
Q  4 tcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataatt 70  Q
    |||||||| ||||||||  |||||||||||||||||||| || |||| | ||||||||| |||| ||||    
T  3031917 tcttccttcttctctcttcattgtttttgaccaatgaaaagatagcacaacaaggttgtaccaaaaatt 3031985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 38919928 - 38920013
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| ||| |||||||||||||| |||||||||||||| | || || | | ||||||||||| || | |||||  |||||||||||    
T  38919928 ctctattcatttttctctctattatttttgaccaatgagaagagagaacaacaaggttgtcctaaaagttgtaccaaaagagttgt 38920013  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 2863632 - 2863703
Alignment:
Q  4 tcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgta 73  Q
    |||||||||||||||||  ||| |||||||||||||||| || |  | | |||||||||||||| |||||||    
T  2863632 tcttcctttttctctctccattatttttgaccaatgaaaagagataacaacaaggttgtcccaaaaattgta 2863703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 4173115 - 4173028
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||| |||||||||||||||  |||||| ||||||||||| | ||||| ||| |||||||||| |||   |||||  |||||||||||    
T  4173115 ctctattcctttttctctctccattgttattgaccaatgagaagaaagaataacaaggttgtcacaaaggttgtactaaaagagttgt 4173028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5005193 - 5005232
Alignment:
Q  1 ctctcttcctttttctc--tctattgtttttgaccaatga 38  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  5005193 ctctcttcctttttctctctctattgtttttgaccaatga 5005232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 6458862 - 6458918
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataatt 70  Q
    |||||| |||||||||||||||| ||| || |||| | |||||||||||||| ||||    
T  6458862 tctctccattgtttttgaccaattaaaagagagcacaacaaggttgtcccaaaaatt 6458918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 16292240 - 16292204
Alignment:
Q  1 ctctcttccttttt-ctctctattgtttttgaccaat 36  Q
    |||||||||||||| ||||||||||||||||||||||    
T  16292240 ctctcttccttttttctctctattgtttttgaccaat 16292204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 41210504 - 41210468
Alignment:
Q  1 ctctcttcctttt-tctctctattgtttttgaccaat 36  Q
    ||||||||||||| |||||||||||||||||||||||    
T  41210504 ctctcttccttttctctctctattgtttttgaccaat 41210468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43153051 - 43153012
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  43153051 ctctcttcctttttctctctccattgtttttgaccaatga 43153012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17118 - 17180
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | ||||||||||    
T  17118 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagcacatcaaggttgtc 17180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2165291 - 2165229
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | ||||||||||    
T  2165291 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagcacatcaaggttgtc 2165229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2176924 - 2176862
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtc 61  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| | ||||||||||    
T  2176924 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagcacatcaaggttgtc 2176862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 6997541 - 6997475
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    ||||||||||||||||||||  || ||||||||||||||||| || |||| | ||||||||||||||    
T  6997541 ctctcttcctttttctctctccatcgtttttgaccaatgaaaagagagcacaacaaggttgtcccaa 6997475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23633314 - 23633275
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatgaaa 40  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  23633314 ctctcttcctttttctctctattgttttggaccaatgaaa 23633275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19713074 - 19713140
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaa 65  Q
    |||||||| |||||||||||  ||||||||| |||||||||| || |||| | ||||||||||||||    
T  19713074 ctctcttcttttttctctctccattgttttttaccaatgaaaagagagcacaacaaggttgtcccaa 19713140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32457243 - 32457202
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  32457243 ctctcttcctttttctctctccattgtttttgaccaatgaaa 32457202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34021163 - 34021122
Alignment:
Q  1 ctctcttcctttttc--tctctattgtttttgaccaatgaaa 40  Q
    |||||||||||||||  |||||||||||||||||||||||||    
T  34021163 ctctcttcctttttccctctctattgtttttgaccaatgaaa 34021122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 608652 - 608565
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||| |||||||||||  |||||||||||||||||| | || || | | |||||||||||||| | |||||  |||| ||||||    
T  608652 ctctcttcatttttctctctccattgtttttgaccaatgagaagagagaacaacaaggttgtcccaacagttgtaccaaaatagttgt 608565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9395328 - 9395241
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    |||||||| |||||||||||  |||||||||||||||||| | || |||| | |||| ||||||||| | |||||  |||| ||||||    
T  9395328 ctctcttcttttttctctctccattgtttttgaccaatgataagagagcacaacaagattgtcccaaaagttgtagcaaaaaagttgt 9395241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11742975 - 11742936
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  11742975 ctctcttcctttttctctctctattgtttttgaccaatga 11742936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12044410 - 12044449
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  12044410 ctctcttcctttttctctctccattgtttttgaccaatga 12044449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16743257 - 16743218
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatga 38  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  16743257 ctctcttcctttttctctctcaattgtttttgaccaatga 16743218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 3023 - 3110
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||  |||||||||||||||||||| || |||| |  || |||||||||| | |||||  |||| ||||||    
T  3023 ctctcttcctttttctctctccattgtttttgaccaatgaaaagagagcacaataaagttgtcccaaaagttgtagcaaaaaagttgt 3110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 48749 - 48821
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||||| | | || | || | |||||||||||||| |||||||| |||||| ||||    
T  48749 tctctctattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaaattgtatcaaaagaattgt 48821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11527 - 11486
Alignment:
Q  1 ctctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  11527 ctctcttcctttttctctctccattgtttttgaccaatgaaa 11486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36857 - 36820
Alignment:
Q  1 ctctcttcctttttctctctattgtttttgaccaatga 38  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  36857 ctctcttcctttctctctctattgttttggaccaatga 36820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0501 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 10505 - 10466
Alignment:
Q  3 ctcttcctttttctctct--attgtttttgaccaatgaaa 40  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  10505 ctcttcctttttctctctccattgtttttgaccaatgaaa 10466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23280 - 23193
Alignment:
Q  1 ctctcttcct--ttttctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||  |||||||||||||||| ||||||||||| | || || ||| |||| |||||| || | || || ||||||||||||    
T  23280 ctctcttcctttttttctctctattgttattgaccaatgagaagagagaatatcaagattgtcctaaaagttatacaaaaagagttgt 23193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 145142 - 145214
Alignment:
Q  14 tctctctattgtttttgaccaatgaaatgaaagcatagcaaggttgtcccaataattgtataaaaagagttgt 86  Q
    ||||||||||||||||||||||| | | || | || | |||||||||||||| | |||||  |||||||||||    
T  145142 tctctctattgtttttgaccaataagaagagaacacaacaaggttgtcccaaaagttgtaccaaaagagttgt 145214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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