View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8195_low_6 (Length: 386)
Name: NF8195_low_6
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8195_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 1857670 - 1857310
Alignment:
| Q |
17 |
catccaatgttatcagtacgtgatctttcaagctgtcatatctgatatctccatgtgtgctgctatcaccaggttcataaaggctagatgatgattcatg |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |
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| T |
1857670 |
catccaatgttatcagtacgtgatctttcaagctgtcatatccgatatctccatgtttgttgctatcaccaggttcataaatgctagatgatgattcatg |
1857571 |
T |
|
| Q |
117 |
aagcaagtaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatg |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1857570 |
aagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatg |
1857471 |
T |
|
| Q |
217 |
cttggtctttcttcccctctaagtctcaaacacttcgccgcaagaatagctacctccatgacctcttgtttgttttcttcattccacataccatcttgaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
1857470 |
cttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaa |
1857371 |
T |
|
| Q |
317 |
taacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttct |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857370 |
taacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttct |
1857310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 1869268 - 1868908
Alignment:
| Q |
17 |
catccaatgttatcagtacgtgatctttcaagctgtcatatctgatatctccatgtgtgctgctatcaccaggttcataaaggctagatgatgattcatg |
116 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1869268 |
catccaatgctatcagtacatggtctttcaagctgtcatatccgatatctccatgtgtgatgctatcaccaggttcataaaagctagatgatgattcatg |
1869169 |
T |
|
| Q |
117 |
aagcaagtaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatg |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1869168 |
aagcaagaaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatg |
1869069 |
T |
|
| Q |
217 |
cttggtctttcttcccctctaagtctcaaacacttcgccgcaagaatagctacctccatgacctcttgtttgttttcttcattccacataccatcttgaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
1869068 |
cttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaa |
1868969 |
T |
|
| Q |
317 |
taacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttct |
377 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
1868968 |
taacttcaaatacattatcttttttcaatcaagatagtaaatgcattgcaagacttcttct |
1868908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 1843659 - 1843295
Alignment:
| Q |
17 |
catccaatgttatcagtacgtgatctttcaagctgtcatatctgatatctccatgtgtgctgctatcaccaggttcataaaggctagatgatgattcatg |
116 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
1843659 |
catccaatgctatcagtacatggtctttcaagctgtcatatccgatatctccatgtgtgatgctatcaccaggttcataaatgctagatgatgattcatg |
1843560 |
T |
|
| Q |
117 |
aagcaagtaccgactctcctctacatttgagtcatcattgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatg |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1843559 |
aagcaagtacctactctcctctacatttgagtcatctttgatccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatg |
1843460 |
T |
|
| Q |
217 |
cttggtctttcttcccctctaagtctcaaacacttcgccgcaagaatagctacctccatgacctcttgtttgttttcttcattccacataccatcttgaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1843459 |
cttggtctttcttcccctctaagtctcaaacacttcgccgcaagaacagccacctccttgatctcttgtttgttttcttcattccacaaaccatcttgaa |
1843360 |
T |
|
| Q |
317 |
taacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttctctct |
381 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||||| |||| ||| |||||||||||||||||| |
|
|
| T |
1843359 |
taacttcaaacacattatcttttttcaatcaagatagtaaattcattgcaagacttcttctctct |
1843295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 81 - 381
Target Start/End: Original strand, 1815437 - 1815738
Alignment:
| Q |
81 |
atcaccaggttcataaaggctagatgatgattcatgaagcaagtaccg-actctcctctacatttgagtcatcattgatccaagagtgcttattcattaa |
179 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
1815437 |
atcaccaaattcataaatgctagatgatgattcatgaagcaagtagtggactctcctctacattaaggtctgcattgatccaagagtgcttatccattaa |
1815536 |
T |
|
| Q |
180 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaatagctacctccatgacc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||| |||||||||| | |
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|
| T |
1815537 |
cctcattccctccaattccatagccacttccttcatgcttggtctttcctcccctataagtctcaaacagttcgccgcaagaacagccacctccatgatc |
1815636 |
T |
|
| Q |
280 |
tcttgtttgttttcttcattccacataccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagacttcttctct |
379 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
1815637 |
acttgtttgttttcttcattccacaaaccatcttgaataacttcaaacacattatcctttttcaagcaagataaaaagtgcgtagcaagacttcttctct |
1815736 |
T |
|
| Q |
380 |
ct |
381 |
Q |
| |
|
|| |
|
|
| T |
1815737 |
ct |
1815738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 174 - 371
Target Start/End: Original strand, 9161353 - 9161550
Alignment:
| Q |
174 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaatagctacctcc |
273 |
Q |
| |
|
||||||||| || || ||||| ||||| ||||||||||||||||| || ||||| |||||||| |||||||||||| | || ||||||||||| |||||| |
|
|
| T |
9161353 |
cattaaccttataccatccaactccattgccacttccttcatgctaggcctttcatcccctcttagtctcaaacaccttgctgcaagaatagcaacctcc |
9161452 |
T |
|
| Q |
274 |
atgacctcttgtttgttttcttcattccacataccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagact |
371 |
Q |
| |
|
| | ||| | |||||||| ||||| | |||||| |||||||| ||||||| | |||| | ||| || ||||| | ||| |||||||||||||| |
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|
| T |
9161453 |
ttaatctcctccttgttttcatcatttaaaataccaacttgaatagcttcaaaaattctatcttgttttaaacaagacaaaaagtgcatagcaagact |
9161550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 371
Target Start/End: Original strand, 9199746 - 9199943
Alignment:
| Q |
174 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaatagctacctcc |
273 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || ||||||||||| |||||| |
|
|
| T |
9199746 |
cattaaccttataccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagcaacctcc |
9199845 |
T |
|
| Q |
274 |
atgacctcttgtttgttttcttcattccacataccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagact |
371 |
Q |
| |
|
| | ||||| |||||||| |||| | | || ||| |||||||| | ||||| | ||||| | ||| || ||||| | ||| |||||||||||||| |
|
|
| T |
9199846 |
ttaatctctttcttgttttcatcatccaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9199943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 371
Target Start/End: Complemental strand, 9119097 - 9118902
Alignment:
| Q |
176 |
ttaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaatagctacctccat |
275 |
Q |
| |
|
||||||| || || ||||| |||||||| | ||||||||| || |||||||| || |||| ||||||||||||| | || ||||||||||| |||||| | |
|
|
| T |
9119097 |
ttaaccttataccatccaactccatagctatttccttcatactaggtctttcctctcctcgaagtctcaaacaccttgctgcaagaatagcaacctcctt |
9118998 |
T |
|
| Q |
276 |
gacctcttgtttgttttcttcattccacataccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagact |
371 |
Q |
| |
|
| ||||| ||||| || |||||| | || ||| |||||||| ||||||| | ||||| | ||| || ||||| | || |||||||||||||| |
|
|
| T |
9118997 |
aatctcttccttgttatcatcattcaaaattccaacttgaatagcttcaaaaagtttatcttgttttaaacaagacaagaagtgcatagcaagact |
9118902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 174 - 371
Target Start/End: Original strand, 9218262 - 9218459
Alignment:
| Q |
174 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaatagctacctcc |
273 |
Q |
| |
|
||||||||| || || ||||| |||||||| |||||| |||| || |||||||| || ||||||||||| |||||| | || |||||||||| |||||| |
|
|
| T |
9218262 |
cattaaccttatgccatccaactccatagctacttccctcatactaggtctttcatcacctctaagtcttaaacaccttgcagcaagaatagaaacctcc |
9218361 |
T |
|
| Q |
274 |
atgacctcttgtttgttttcttcattccacataccatcttgaataacttcaaatacattatcctttttcaagcaagatagaaaatgcatagcaagact |
371 |
Q |
| |
|
| | ||||| |||||||| ||||| | || ||| |||||||| | ||||| | ||||| | ||| || ||||| | ||| |||||||||||||| |
|
|
| T |
9218362 |
ttaatctctttcttgttttcatcattgaaaattccaacttgaatagcatcaaaaagtttatcttgttttaaacaagacaaaaagtgcatagcaagact |
9218459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 273
Target Start/End: Original strand, 9170179 - 9170278
Alignment:
| Q |
174 |
cattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgcaagaatagctacctcc |
273 |
Q |
| |
|
||||||||| || || ||||| ||||| |||||||||||||| | |||||||| |||||||||||||| |||||| | | ||||||||||| |||||| |
|
|
| T |
9170179 |
cattaaccttatgccatccaactccattgccacttccttcatacaaggtctttcatcccctctaagtcttaaacaccttgaagcaagaatagcaacctcc |
9170278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 158 - 324
Target Start/End: Original strand, 9229131 - 9229297
Alignment:
| Q |
158 |
tccaagagtgcttattcattaacctcattccctccaattccatagccacttccttcatgcttggtctttcttcccctctaagtctcaaacacttcgccgc |
257 |
Q |
| |
|
|||||| |||||| | ||||||||| | ||||| | |||||||||||||| |||||||| |||||||| || ||| |||||||||| ||| | || || |
|
|
| T |
9229131 |
tccaagggtgcttctccattaaccttaacccctctagctccatagccacttctttcatgctaggtctttcctcgcctttaagtctcaagcaccttgcagc |
9229230 |
T |
|
| Q |
258 |
aagaatagctacctccatgacctcttgtttgttttcttcattccacataccatcttgaataacttca |
324 |
Q |
| |
|
||||||||| || ||| | | ||| | ||||| || |||||| | |||||| |||||| ||||||| |
|
|
| T |
9229231 |
aagaatagcaacttccttaatctcctccttgttctcatcattcaaaataccaacttgaagaacttca |
9229297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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