View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8195_low_7 (Length: 377)
Name: NF8195_low_7
Description: NF8195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8195_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 13047844 - 13048198
Alignment:
| Q |
1 |
tggtggtgtcggtggtggtagttgtggtgcttatggttttggggtacatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttaccca |
100 |
Q |
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| T |
13047844 |
tggtggtgtcggtggtggtagttgtggtggttattgttgtggggtacatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttaccca |
13047943 |
T |
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| Q |
101 |
ttggtgagtttctttggtttttgagaagctttgggattttgttgtgcatggtagagaatttagaggttgagtttgtgatggctttctgaaaaacattgag |
200 |
Q |
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| T |
13047944 |
ttggtgagtttctttggtttttgagaagctttgggattttgttgtgcatggtagagaatttagaggttgagttggtgatgactttctgaaaaacattgag |
13048043 |
T |
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| Q |
201 |
aaggnnnnnnngagaaggagggatagaaatgtagaagatgaatgattctatgtacgactttgaagaggtctttatttggatattatatatacatgaaaat |
300 |
Q |
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| T |
13048044 |
aaggaaaaaaagagaaggagggagagagatgtaggagatgaatgattgcatgcacgattttgaagaggtctttatttggatattatatatacatgaaaat |
13048143 |
T |
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| Q |
301 |
ttgaaaacgactaggttgattttggaaataggaagcattaaaacttgatatagaa |
355 |
Q |
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| T |
13048144 |
ttgaaaacgactaggtttattttggaaataggaagcattaaaacttgatatagaa |
13048198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 13052841 - 13053195
Alignment:
| Q |
1 |
tggtggtgtcggtggtggtagttgtggtgcttatggttttggggtacatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttaccca |
100 |
Q |
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| T |
13052841 |
tggtggtgtcggtggtggtagttgtggtggttattgttgtggggtacatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttaccca |
13052940 |
T |
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| Q |
101 |
ttggtgagtttctttggtttttgagaagctttgggattttgttgtgcatggtagagaatttagaggttgagtttgtgatggctttctgaaaaacattgag |
200 |
Q |
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| T |
13052941 |
ttggtgagtttctttggtttttgagaagctttgggattttgttgtgcatggtagagaatttagaggttgagttggtgatgactttctgaaaaacattgag |
13053040 |
T |
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| Q |
201 |
aaggnnnnnnngagaaggagggatagaaatgtagaagatgaatgattctatgtacgactttgaagaggtctttatttggatattatatatacatgaaaat |
300 |
Q |
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| T |
13053041 |
aaggaaaaaaagagaaggagggagagagatgtaggagatgaatgattgcatgcacgattttgaagaggtctttatttggatattatatatacatgaaaat |
13053140 |
T |
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| Q |
301 |
ttgaaaacgactaggttgattttggaaataggaagcattaaaacttgatatagaa |
355 |
Q |
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| T |
13053141 |
ttgaaaacgactaggtttattttggaaataggaagcattaaaacttgatatagaa |
13053195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 13042959 - 13043269
Alignment:
| Q |
1 |
tggtggtgtcggtggtggtagttgtggtgcttatggttttggggtacatgaagtaaagaaggaagaggcataaagtaataaagagagtgaattttaccca |
100 |
Q |
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||||||||| ||||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13042959 |
tggtggtgttggtggtgttagttgttgtggttatggttgtggggtacatgaagtaaagaaggaagaggcataaagtaataaagagagtgaactttaccca |
13043058 |
T |
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| Q |
101 |
ttggtga---------------gtttctttggtttttgagaagctttgggattttgttgtgcatggtagagaatttagaggttgagtttgtgatggcttt |
185 |
Q |
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| T |
13043059 |
ttggtgaattatgatgttgtgagtttctttggattttgagaagctttgggattttgttgtgcatggtagagaatttaaaggttgagttggtgatggcttt |
13043158 |
T |
|
| Q |
186 |
ctgaaaaacattgagaaggnnnnnnngagaaggagggatagaaatgtagaagatgaatgattctatgtacgactttgaagaggtctttatttggatatta |
285 |
Q |
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| T |
13043159 |
ctgaaaaacattgagaagaaaaaaaagagaaggagggagagagatgtaggagatgaatgattgcatgtacgactttgaagaggtctttagttggatatta |
13043258 |
T |
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| Q |
286 |
tatatacatga |
296 |
Q |
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||||||||||| |
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| T |
13043259 |
tatatacatga |
13043269 |
T |
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