View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8196_high_4 (Length: 384)
Name: NF8196_high_4
Description: NF8196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8196_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 30936538 - 30936890
Alignment:
| Q |
18 |
ttctcaataacaaaacttgatttgcaaaagagggaaggtgggcatgtttattgtggattctgtgtatttttcttgcaatgaaattgtggcttaatggtga |
117 |
Q |
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| T |
30936538 |
ttctcaataacaaaacttgatttgcaaaagagggaaggtgggcatgtttattgtggattctgtgtatttttcttgcaatgaaattgtggcttaatggtga |
30936637 |
T |
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| Q |
118 |
tttatttgtgacaacagagatggcattccatacccatcatgtgaatacatgtgacaattttgttacggtagtatagggtcccacgttttaggggaccttt |
217 |
Q |
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| T |
30936638 |
tttatttgtgacaacagagatggcattccatacccatcatgtgaatacatgtgacaattttgttacggtagtatagggtcccacgttttaggggaccttt |
30936737 |
T |
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| Q |
218 |
gcatgtgttttgattctgttcaagtgggtaatacaacatggatttgcaatgttggtctttagtattagtatatgctgcttttgttcctatttccttgctt |
317 |
Q |
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| T |
30936738 |
gcatgtgttttgattctgttcaagtgggtaatacaacatggatttgcaatgttggtctttagtattagtatatgctgcttttgtt-ctatttccttgctt |
30936836 |
T |
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| Q |
318 |
aaccaattgaacaaatgcatataaaggtggtgctttga-tttaagatggttcat |
370 |
Q |
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| T |
30936837 |
aaccaattgaacaaatgcagataaaggtggtgctttgattttaagatggttcat |
30936890 |
T |
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