View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8196_high_9 (Length: 271)
Name: NF8196_high_9
Description: NF8196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8196_high_9 |
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| [»] scaffold0735 (2 HSPs) |
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Alignment Details
Target: scaffold0735 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0735
Description:
Target: scaffold0735; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 5393 - 5465
Alignment:
| Q |
17 |
tactccaatattactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
89 |
Q |
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| T |
5393 |
tactccaatattactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
5465 |
T |
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Target: scaffold0735; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 5494 - 5554
Alignment:
| Q |
192 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatggtcaccc |
252 |
Q |
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| T |
5494 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatggtcaccc |
5554 |
T |
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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 42923661 - 42923733
Alignment:
| Q |
17 |
tactccaatattactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
89 |
Q |
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| T |
42923661 |
tactccaatattactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
42923733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 192 - 252
Target Start/End: Original strand, 42923762 - 42923822
Alignment:
| Q |
192 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatggtcaccc |
252 |
Q |
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| T |
42923762 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatggtcaccc |
42923822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 5657055 - 5657118
Alignment:
| Q |
117 |
cactctttaaaatttctaaataaagaagttatttattcaaaaagtttaataattcaattttcaa |
180 |
Q |
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| T |
5657055 |
cactctttaaagtttttaaataaagaagttattttttcaaaaagttaaacaatttcattttcaa |
5657118 |
T |
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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 44461649 - 44461682
Alignment:
| Q |
199 |
attttcataaaaatttactattttaaatctttaa |
232 |
Q |
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| T |
44461649 |
attttcataaaaatttactatttaaaatctttaa |
44461682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 37348347 - 37348415
Alignment:
| Q |
108 |
tctttaggtcactctttaaaatttctaaataaagaagttatttattcaaaaagtttaataattcaattt |
176 |
Q |
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|||||| ||||| |||||| ||| |||||||| || ||||| ||||||||| || ||||||||||||| |
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| T |
37348347 |
tctttaagtcacactttaaggtttttaaataaaaaatttattcattcaaaaaattaaataattcaattt |
37348415 |
T |
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