View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8196_low_1 (Length: 586)

Name: NF8196_low_1
Description: NF8196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8196_low_1
NF8196_low_1
[»] chr1 (3 HSPs)
chr1 (18-395)||(42100215-42100592)
chr1 (431-576)||(42100929-42101075)
chr1 (167-211)||(7537047-7537091)
[»] chr4 (4 HSPs)
chr4 (167-224)||(52198331-52198388)
chr4 (181-220)||(36498654-36498693)
chr4 (19-70)||(41830594-41830645)
chr4 (167-224)||(33913930-33913989)
[»] chr8 (3 HSPs)
chr8 (176-224)||(41951176-41951224)
chr8 (153-220)||(6474020-6474087)
chr8 (167-224)||(35910561-35910620)
[»] chr5 (1 HSPs)
chr5 (181-224)||(3622253-3622296)
[»] chr2 (2 HSPs)
chr2 (176-224)||(14818700-14818748)
chr2 (185-225)||(1208617-1208657)
[»] chr7 (2 HSPs)
chr7 (153-224)||(38701558-38701629)
chr7 (19-49)||(3051906-3051936)
[»] chr6 (2 HSPs)
chr6 (161-224)||(6793471-6793534)
chr6 (179-224)||(28067307-28067352)
[»] chr3 (1 HSPs)
chr3 (181-245)||(782248-782311)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 42100215 - 42100592
Alignment:
Q  18 gttatgaatgacatttacatatgatcatccaattgcccaaagaaaaacaacaaaattgaatatcataggttgttgcggttgtgatacggggttacacttc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42100215 gttatgaatgacatttacatatgatcatccaattgcccaaagaaaaacaacaaaattgaatatcataggttgttgcggctgtgatacggggttacacttc 42100314  T
Q  118 ggtgacattgagacttaattagcaacacatttggaggtaacacttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattct 217  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||    
T  42100315 ggtgacattgagacttaattagcaatatatttggaggtaacacttcgacgactttgaatttgatgactttgtttctatcttgcttctaaccaatatttct 42100414  T
Q  218 ctctcatttaaaatacattaaagtcaccgaagacnnnnnnntacaaaatcactcgaaatatttccctacatttggagtgttttaactgattttccaatat 317  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42100415 ctctcatttaaaatacattaaagtcaccgaagacacaaaaatacaaaatcactcgaaatatttccctacatttggagtgttttaaccgattttccaatat 42100514  T
Q  318 tttttaattgaaaaatgttacattgccgtaaaactttgatttgtcgataagacttcaatatttacaatcactccatca 395  Q
    |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  42100515 tttttatttgaaaaatgttacattgccgtaaaactttgatttttcgataagacttcaatatttacaattactccatca 42100592  T

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Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 431 - 576
Target Start/End: Original strand, 42100929 - 42101075
Alignment:
Q  431 cctagttaattttctcattggtcatatgttttacctt-acgtttagccctaaattctctccctgttttctcttgatttatcgagcccaaagataacatgc 529  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  42100929 cctagttgattttctcattggtcatatgttttacctttacgtttagccctaaattctctccctgttttttcttgatttatcgagtccaaagataacatgc 42101028  T
Q  530 aaacagtgatctaattgtatttttcggcgttgcagctaccttctctg 576  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  42101029 aaacagtgatcttattgtattttccggcgttgcagctaccttctctg 42101075  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 7537091 - 7537047
Alignment:
Q  167 gactttgagtttgatgactttgtctctatctcgcttctaaccaat 211  Q
    ||||||||||||| |||||||||||||||||| || |||||||||    
T  7537091 gactttgagtttggtgactttgtctctatctctctcctaaccaat 7537047  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 52198331 - 52198388
Alignment:
Q  167 gactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctctcat 224  Q
    |||||| ||||||| |||||| ||||||||||| ||||||||||||||| ||||||||    
T  52198331 gactttaagtttgacgactttatctctatctcgattctaaccaataattatctctcat 52198388  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 36498693 - 36498654
Alignment:
Q  181 tgactttgtctctatctcgcttctaaccaataattctctc 220  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  36498693 tgactttgtctctatctctcttctaaccaataattctctc 36498654  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 41830645 - 41830594
Alignment:
Q  19 ttatgaatgacatttacatatgatcatccaattgcccaaagaaaaacaacaa 70  Q
    ||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  41830645 ttatgaatgtcatatacatatgatcatccaagtgctcaaagaaaaacaacaa 41830594  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 33913930 - 33913989
Alignment:
Q  167 gactttgagtttgatgactttgtctcta--tctcgcttctaaccaataattctctctcat 224  Q
    ||||||| ||||||||||||||||| ||  |||| || ||||||||||||||||||||||    
T  33913930 gactttgtgtttgatgactttgtctttatctctctctcctaaccaataattctctctcat 33913989  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 41951176 - 41951224
Alignment:
Q  176 tttgatgactttgtctctatctcgcttctaaccaataattctctctcat 224  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||||    
T  41951176 tttgatgactttgtctctatctctctcctaatcaataattctctctcat 41951224  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 220
Target Start/End: Complemental strand, 6474087 - 6474020
Alignment:
Q  153 ggtaacacttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctc 220  Q
    ||||||||||||  ||||||||||||| ||| ||||||| |||||| |||||||| ||||||| ||||    
T  6474087 ggtaacacttcggtgactttgagtttggtgattttgtctatatctctcttctaactaataattatctc 6474020  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 35910561 - 35910620
Alignment:
Q  167 gactttgagtttgatgactttgtctcta--tctcgcttctaaccaataattctctctcat 224  Q
    ||||||| ||||||||||||||||| ||  |||| || |||||||||||||| |||||||    
T  35910561 gactttgtgtttgatgactttgtctttatctctctctcctaaccaataattccctctcat 35910620  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 3622296 - 3622253
Alignment:
Q  181 tgactttgtctctatctcgcttctaaccaataattctctctcat 224  Q
    |||||||||||||||||| |||||||||||||||| ||||||||    
T  3622296 tgactttgtctctatctctcttctaaccaataattttctctcat 3622253  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 14818700 - 14818748
Alignment:
Q  176 tttgatgactttgtctctatctcgcttctaaccaataattctctctcat 224  Q
    |||| |||||||||||||||||| ||  |||||||||||||||||||||    
T  14818700 tttggtgactttgtctctatctctctcataaccaataattctctctcat 14818748  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 1208617 - 1208657
Alignment:
Q  185 tttgtctctatctcgcttctaaccaataattctctctcatt 225  Q
    |||||||||||||| ||  ||||||||||||||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctctcatt 1208657  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 38701629 - 38701558
Alignment:
Q  153 ggtaacacttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctctcat 224  Q
    |||||||||| || ||  |||| |||| ||||||||| ||||| || |||||||||||||||||||| ||||    
T  38701629 ggtaacacttagatgatcttgaatttggtgactttgtttctatatctcttctaaccaataattctctttcat 38701558  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 3051936 - 3051906
Alignment:
Q  19 ttatgaatgacatttacatatgatcatccaa 49  Q
    |||||||||||||||||||||||||||||||    
T  3051936 ttatgaatgacatttacatatgatcatccaa 3051906  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 6793471 - 6793534
Alignment:
Q  161 ttcgacgactttgagtttgatgactttgtctctatctcgcttctaaccaataattctctctcat 224  Q
    ||||| ||||||| ||||| ||| ||||||||||||||  | ||||||||||||| ||||||||    
T  6793471 ttcgatgactttgtgtttggtgattttgtctctatctctatcctaaccaataattatctctcat 6793534  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 28067307 - 28067352
Alignment:
Q  179 gatgactttgtctctatctcgcttctaaccaataattctctctcat 224  Q
    ||||| ||||||| |||||| |||||||||||| ||||||||||||    
T  28067307 gatgattttgtctttatctctcttctaaccaatcattctctctcat 28067352  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 782248 - 782311
Alignment:
Q  181 tgactttgtctctatctcgcttctaaccaataattctctctcatttaaaatacattaaagtcacc 245  Q
    |||||||||||||||||| || ||||| ||  ||||||||||| | |||||||| ||||||||||    
T  782248 tgactttgtctctatctctctcctaacaaaacattctctctca-tcaaaatacactaaagtcacc 782311  T

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