View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8196_low_3 (Length: 388)
Name: NF8196_low_3
Description: NF8196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8196_low_3 |
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| [»] scaffold0735 (2 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 114 - 382
Target Start/End: Complemental strand, 42923571 - 42923303
Alignment:
| Q |
114 |
ctgcaagtagtgcaggaagggggtggcagaatgcacaaaaccaatacaaatgaatgaaaattctgacaataggattcccactcttgttccttccaaacac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923571 |
ctgcaagtagtgcaggaagggggtggcagaatgcacaaaaccaatacaaatgaatgaaaattctgacaataggattcccactcttgttccttccaaacac |
42923472 |
T |
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| Q |
214 |
tccatacgataaagcttcccattaccatttttaatccactgtttttctctttctcttcttaatcttttaccaatttctacatacaaggaaatccacccaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923471 |
tccatacgataaagcttcccattaccatttttaatccactgtttttctctttctcttcttaatcttttaccaatttctacatacaaggaaatccacccaa |
42923372 |
T |
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| Q |
314 |
ccaaattcatccaacaattctgctctcaattgtactactcttccttttttgactctcatttcttctcac |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923371 |
ccaaattcatccaacaattctgctctcaattgtactactcttccttttttgactctcatttcttctcac |
42923303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42923684 - 42923637
Alignment:
| Q |
1 |
agagaactcagtaatattggagtagaatcttaccgtgagagacagttt |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923684 |
agagaactcagtaatattggagtagaatcttaccgtgagagacagttt |
42923637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0735 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0735
Description:
Target: scaffold0735; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 114 - 382
Target Start/End: Complemental strand, 5303 - 5034
Alignment:
| Q |
114 |
ctgcaagtagtgcaggaagggggtggcagaatgcacaaaaccaatacaaatgaatgaaaattctgacaataggattcccactcttgttccttccaaacac |
213 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303 |
ctgcaagtagtgcaggaagggggtggcacaatgcacaaaaccaatacaaatgaatgaaaattctgacaataggattcccactcttgttccttccaaacaa |
5204 |
T |
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| Q |
214 |
tccatacgataaagcttcccattaccatttttaatccactgtttttctctttctcttcttaatcttttaccaatttctacatacaaggaaatccacccaa |
313 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5203 |
tccatacgataaagcttcccattaccatttttactccactgtttttctctctctcttcttaatctttcaccaatttctacatacaaggaaatccacccaa |
5104 |
T |
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| Q |
314 |
ccaaattcatccaacaa-ttctgctctcaattgtactactcttccttttttgactctcatttcttctcac |
382 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5103 |
ccaaattcatccaacaacctctcctctcaattgtactactcttccttttttgactctcatctcttctcac |
5034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0735; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5416 - 5369
Alignment:
| Q |
1 |
agagaactcagtaatattggagtagaatcttaccgtgagagacagttt |
48 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5416 |
agagaactcagtaatattggagtagaatcttaccgtgagagacagttt |
5369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 14880 - 15027
Alignment:
| Q |
232 |
ccattaccatttttaatccactgtttttctctttctcttcttaatcttttaccaatttctacatacaaggaaatccacccaaccaaattcatccaacaat |
331 |
Q |
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||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14880 |
ccattaccatttt-aatccaccgtttt-ctctttctcttct-aatcttttaccaatttctacatacaaggaaatccacccaaccaaattcatccaacaat |
14976 |
T |
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| Q |
332 |
tctgctctcaattgtactactcttccttttttgactctcatttcttctcac |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14977 |
tctgctctcaattgtactactcttccttttttgactctcatttcttctcac |
15027 |
T |
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