View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8196_low_5 (Length: 352)
Name: NF8196_low_5
Description: NF8196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8196_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 36008164 - 36008026
Alignment:
| Q |
18 |
gttatttacttcctgggtttcggtgctcattgacacagatttactgattcatgtagaagtccttgtttaaccataacttatttaagtctatctattgaat |
117 |
Q |
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| T |
36008164 |
gttatttacttcctgggtttcggtgctcattgacacagatttactgattcatgtagaagtccttgtttaaccataacttatttaagtctatctattgaat |
36008065 |
T |
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| Q |
118 |
ataagaaaaccaaacttgtacggattcaaaatacttgtc |
156 |
Q |
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| T |
36008064 |
ataagaaaaccaaacttgtacggattcaaaatacttgtc |
36008026 |
T |
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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 36008022 - 36007940
Alignment:
| Q |
208 |
gatgtgaaaactgaagatcatactattacatattttagaaagttggaagagttgagtttgagattttccgtttgtttctggaa |
290 |
Q |
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| T |
36008022 |
gatgtgaaaactgaagatcatactatgacatattttagaaaggtggaagagttgagtttgagattttccgtttgtttctggaa |
36007940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 90 - 230
Target Start/End: Complemental strand, 21068381 - 21068240
Alignment:
| Q |
90 |
ataacttatttaagtctatctattgaatataagaaaaccaaacttgtacggattcaaaatacttgtcgggattaatatagcatgcaggtgttgcaagatg |
189 |
Q |
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| T |
21068381 |
ataacttgtttaagtctatctattgaatataagaaaaccaaacttgtatggattcaaaatactcattagaaattatatagaatgcaagtgttgcaagatg |
21068282 |
T |
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| Q |
190 |
cgtactagtactaaccttgatgtgaaaactg-aagatcatac |
230 |
Q |
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| T |
21068281 |
tgtactagtacttaccttcgtgtgaaaactgaaagatcatac |
21068240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 12540925 - 12540965
Alignment:
| Q |
244 |
agaaagttggaagagttgagtttgagattttccgtttgttt |
284 |
Q |
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| T |
12540925 |
agaaagatggaagagttgagtttgagattttctgtttgttt |
12540965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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