View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8196_low_6 (Length: 317)
Name: NF8196_low_6
Description: NF8196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8196_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 486972 - 486675
Alignment:
| Q |
1 |
tttcagactttggaatggccagaatatttgcaggaagtgaaggtgaagctaacactactacaatagttggcacatagtaagcacctagtaccttccatga |
100 |
Q |
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| T |
486972 |
tttcagactttggaatggccagaatatttgcaggaagtgaaggtgaagctaacactactacaatagttggcacatagtaagcacctagtaccttccatga |
486873 |
T |
|
| Q |
101 |
acatttttccttttgcatatgtatacatgcttaacactacccattttgtagtggatatatggctccggagtatgcaatggagggtctatattccataaaa |
200 |
Q |
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| T |
486872 |
acatttttccttttgcatatgtatacatgcttaacactacccattttgtagtggatatatggctccggagtatgcaatggagggtctatattccataaaa |
486773 |
T |
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| Q |
201 |
tctgatgtttttggctttggagtactattgcttgagatcattacagggatacgtaacgcgggtttctgttactccaaaaccactcctagccttctagc |
298 |
Q |
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| T |
486772 |
tctgatgtttttggctttggagtactattgcttgagatcattacagggatacgtaacgcgggtttctgttactccaaaaccactcctagccttctagc |
486675 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 36290782 - 36290843
Alignment:
| Q |
147 |
tgtagtggatatatggctccggagtatgcaatggagggtctatattccataaaatctgatgt |
208 |
Q |
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| T |
36290782 |
tgtagtggatatatgtctccagaatacgcaatggagggtctattttcagtcaaatctgatgt |
36290843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 1077554 - 1077642
Alignment:
| Q |
150 |
agtggatatatggctccggagtatgcaatggagggtctatattccataaaatctgatgtttttggctttggagtactattgcttgagat |
238 |
Q |
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| T |
1077554 |
agtggttatatggctccagaatatgccattgatggactattctccacaaaatctgatgtatttagctttggcgtattattgctagagat |
1077642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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