View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8196_low_7 (Length: 312)
Name: NF8196_low_7
Description: NF8196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8196_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 3056051 - 3055753
Alignment:
| Q |
1 |
tcttctttcactactccttgttctctcttaccttccaaaaacaaactcacttttcttcaacataacaaactttgatgatcctacagttgcatcaaacatg |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3056051 |
tcttttttcactactccttgttctctcttaccttccaaaaacaaactcacttttgttcaacataacaaactttgatgatccaacagttgcatcaaacatg |
3055952 |
T |
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| Q |
101 |
tcataccaaggtgatggaaaatccaccaatggttccattgatctcaacaaagtaagttaccttttccgtgtaggaagagcattctattcacaacctttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055951 |
tcataccaaggtgatggaaaatccaccaatggttccattgatctcaacaaagtaagttaccttttccgtgtaggaagagcattctattcacaacctttac |
3055852 |
T |
|
| Q |
201 |
atttatgggacaa-aaaaccaacactctcacaagtttcaccacacgtttttcttttacaattgataaactaaatgacactacatacggtgacggttttg |
298 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3055851 |
atttatgggacaaaaaaaccaacactctcacaagtttcaccacacgtttttcttttacaattgataaactaaatgacactacatacggtgatggttttg |
3055753 |
T |
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