View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8197_high_3 (Length: 557)

Name: NF8197_high_3
Description: NF8197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8197_high_3
NF8197_high_3
[»] chr2 (3 HSPs)
chr2 (103-541)||(36454629-36455056)
chr2 (1-104)||(12335724-12335827)
chr2 (9-101)||(604302-604393)
[»] chr1 (4 HSPs)
chr1 (1-105)||(34917339-34917443)
chr1 (9-103)||(34024748-34024842)
chr1 (60-106)||(43742339-43742385)
chr1 (60-101)||(42465276-42465317)
[»] chr4 (6 HSPs)
chr4 (1-103)||(27366434-27366536)
chr4 (1-105)||(48945023-48945127)
chr4 (1-103)||(45113337-45113439)
chr4 (9-101)||(30200787-30200879)
chr4 (1-103)||(1838765-1838867)
chr4 (60-105)||(2299597-2299642)
[»] chr7 (3 HSPs)
chr7 (4-103)||(21868240-21868339)
chr7 (4-105)||(4057861-4057962)
chr7 (1-101)||(47022927-47023030)
[»] chr8 (4 HSPs)
chr8 (1-103)||(15362407-15362509)
chr8 (2-103)||(18166286-18166387)
chr8 (1-100)||(20266147-20266246)
chr8 (1-100)||(21052776-21052875)
[»] chr5 (4 HSPs)
chr5 (2-100)||(1592512-1592610)
chr5 (1-102)||(7955094-7955195)
chr5 (9-105)||(7771199-7771295)
chr5 (60-96)||(29388028-29388064)
[»] chr3 (2 HSPs)
chr3 (4-97)||(34147421-34147514)
chr3 (2-105)||(28983925-28984028)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 103 - 541
Target Start/End: Original strand, 36454629 - 36455056
Alignment:
Q  103 taatgttgcagattccggttattggtggaaaacaaataaatgcttttggtcgtggaattggaacatgccgacgttaatgttgctaatgagatttattgat 202  Q
    |||||||||||||||||||||||||||||||||||||    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36454629 taatgttgcagattccggttattggtggaaaacaaat----gcttttggacgtggaattggaacatgccgaagttaatgttgctaatgagatttattgat 36454724  T
Q  203 ccaatagttgaaattagcttttacataatgcaagattcgtctcacttgtgcattataaaattaacctcaaacaatacttattgttcaaaacattttttat 302  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36454725 ccaatagttgaaattagcttttacatagtgcaagattcgtctcacttgtgcattataaaattaacctcaaacaatacgtattgttcaaaacattttttat 36454824  T
Q  303 aatgtgggatcaaaggatatccaatggactggactcatagttggtgtgaccttttttgtttcttataaactaactctagtctctagtatagtatccctnn 402  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  36454825 aatgtgggatcaaaggatatccaatggactatactcatagttggtgtgaccttttttgtttcttataaactaactctagtctctagtatagtatccct-- 36454922  T
Q  403 nnnnnnnnnnnnnnnnnnctctattgatcaaattttttcaagaagtaaaaatatagtatagtagtgtcgttaaatgacatcattaattaacttcaggttc 502  Q
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36454923 -----aaaaaacaaaactctctattgatcaaattttttcaagaagtaaaaatatagtatagtagtgtcgttaaatgacatcattaattaacttcaggttc 36455017  T
Q  503 gtcgtatctgcaaccaatttaagcttgcgccaaaattgt 541  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36455018 gtcgtatctgcaaccaatttaagcttgcgccaaaattgt 36455056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 12335827 - 12335724
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  12335827 ctgggtatattatttttgttcccttctaccaaacataggaatatcatatttaatgctcttatttccaggaatatattttttatctcccaaacaaacaccc 12335728  T
Q  101 ccta 104  Q
    ||||    
T  12335727 ccta 12335724  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 604302 - 604393
Alignment:
Q  9 attattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacacccc 101  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||  |||||||||||| |||||||||||||||||||    
T  604302 attatttttgttcccttctaccaaacataggaatatcatatttaatgcccttattctcataaatatatttttt-tctcccaaacaaacacccc 604393  T

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Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 34917443 - 34917339
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34917443 ctgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 34917344  T
Q  101 cctaa 105  Q
    |||||    
T  34917343 cctaa 34917339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 34024842 - 34024748
Alignment:
Q  9 attattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 103  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  34024842 attatttttgttcccttctaccaaacataggaatatcgtatttaatacctttattcccaggaatatattttttatctcccaaacaaacaccccct 34024748  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 43742339 - 43742385
Alignment:
Q  60 tattcccaggaatatattttttatctcccaaacaaacaccccctaat 106  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||    
T  43742339 tattcccaggaatatactttttatctcccaaacaaacgccccctaat 43742385  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 42465317 - 42465276
Alignment:
Q  60 tattcccaggaatatattttttatctcccaaacaaacacccc 101  Q
    ||||||||||||| || |||||||||||||||||||| ||||    
T  42465317 tattcccaggaatgtactttttatctcccaaacaaacgcccc 42465276  T

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Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 27366434 - 27366536
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27366434 ctgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 27366533  T
Q  101 cct 103  Q
    |||    
T  27366534 cct 27366536  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 48945023 - 48945127
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48945023 ctgggtatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 48945122  T
Q  101 cctaa 105  Q
    |||||    
T  48945123 cctaa 48945127  T

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Target: chr4; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45113337 - 45113439
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45113337 ctgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattctcaggaatatattttttatctcccaaacaaacaccc 45113436  T
Q  101 cct 103  Q
    |||    
T  45113437 cct 45113439  T

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Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 30200787 - 30200879
Alignment:
Q  9 attattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacacccc 101  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30200787 attatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacacccc 30200879  T

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Target: chr4; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1838765 - 1838867
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  1838765 ctgggtatattatttttgttcccttctaccaaatataggaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaacaccc 1838864  T
Q  101 cct 103  Q
    |||    
T  1838865 cct 1838867  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 2299642 - 2299597
Alignment:
Q  60 tattcccaggaatatattttttatctcccaaacaaacaccccctaa 105  Q
    |||||| |||||| || |||||||||||||||||||| ||||||||    
T  2299642 tattcctaggaatgtactttttatctcccaaacaaacgccccctaa 2299597  T

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Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 21868240 - 21868339
Alignment:
Q  4 ggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 103  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21868240 ggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 21868339  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 4057962 - 4057861
Alignment:
Q  4 ggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 103  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4057962 ggtatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccct 4057863  T
Q  104 aa 105  Q
    ||    
T  4057862 aa 4057861  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 47023030 - 47022927
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttt---tatctcccaaacaaaca 97  Q
    ||||||| |||||| |||||||||||||||||| |||||||||| ||||||||| ||||||||| ||| |||||||||||   |||||||||||||||||    
T  47023030 ctgggtatattatttttgttcccttctaccaaatataggaatattgtatttaatacccttattctcagtaatatattttttactatctcccaaacaaaca 47022931  T
Q  98 cccc 101  Q
    ||||    
T  47022930 cccc 47022927  T

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Target: chr8 (Bit Score: 91; Significance: 8e-44; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 15362509 - 15362407
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15362509 ctgggtatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 15362410  T
Q  101 cct 103  Q
    |||    
T  15362409 cct 15362407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 18166387 - 18166286
Alignment:
Q  2 tgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacacccc 101  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18166387 tgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcacaggaatatattttttatctcccaaacaaacacccc 18166288  T
Q  102 ct 103  Q
    ||    
T  18166287 ct 18166286  T

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Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 20266246 - 20266147
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  20266246 ctgggtatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaacaccc 20266147  T

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Target: chr8; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 21052875 - 21052776
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  21052875 ctgggtatattatttttgttcccttctaccaaacatagaaatatcgtatttaatgcccttattcctagaaatatattttttatctcccaaacaaacaccc 21052776  T

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Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 1592610 - 1592512
Alignment:
Q  2 tgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1592610 tgggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccagaaatatattttttatctcccaaacaaacaccc 1592512  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 7955195 - 7955094
Alignment:
Q  1 ctgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccc 100  Q
    ||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7955195 ctgggtatattatttttgttcccttctaccaaacataggaatatcatatttaatgcccttatacccaggaatatattttttatctcccaaacaaacaccc 7955096  T
Q  101 cc 102  Q
    ||    
T  7955095 cc 7955094  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 7771199 - 7771295
Alignment:
Q  9 attattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacaccccctaa 105  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  7771199 attatttttgtttccttctaccaaacatagaaatatcgtatttaatgtccttattcctaagaatatattttttatctcccaaacaaacaccccctaa 7771295  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 29388028 - 29388064
Alignment:
Q  60 tattcccaggaatatattttttatctcccaaacaaac 96  Q
    ||||||||||||| || ||||||||||||||||||||    
T  29388028 tattcccaggaatgtactttttatctcccaaacaaac 29388064  T

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Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 34147514 - 34147421
Alignment:
Q  4 ggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaaca 97  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34147514 ggtatattatttttgttcccttctaccaaacataggaatatcgtatttaatgccattattcccaggaatatattttttatctcccaaacaaaca 34147421  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 28983925 - 28984028
Alignment:
Q  2 tgggtagattattcttgttcccttctaccaaacataggaatatcgtatttaatgcccttattcccaggaatatattttttatctcccaaacaaacacccc 101  Q
    |||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  28983925 tgggtatattttttttgttcgcttctaccaaacataggaatatcgtatttaatgcccttattctcataaatatattttttatctcccaaacaaacacccc 28984024  T
Q  102 ctaa 105  Q
    ||||    
T  28984025 ctaa 28984028  T

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