View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8197_high_4 (Length: 418)
Name: NF8197_high_4
Description: NF8197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8197_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 42213077 - 42212677
Alignment:
| Q |
1 |
catatacatgcgatggaatggcaatggaattaaatggtgtatgttgtaattgaacttgattagatgacggaaggatggagggccaaaataactgtctaac |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42213077 |
catatacatgcgatggaatggcgatggaattaaatggtgtatgttgtaattgaacttgattagatgacggaaggatggagggccaaaataactgtctaac |
42212978 |
T |
|
| Q |
101 |
tggaaaatggttataaagaaaccatggactagtaccaggtgcgggtgatacctcggacatagataactcctgcacaacaggagttttctccacttcagtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42212977 |
tggaaaatggttataaagaaaccatggactagtaccaggtgcgggtgatacctcggacatagataactcctgcacaacaggagttttctctacttcagtg |
42212878 |
T |
|
| Q |
201 |
tttattgacttagctatctacaaacagaagcaaatgtcagttttccggtatatatttacttttgcaaacaaaaagagttatcccatactcaaagatttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42212877 |
tttattgacttagctatctacaaacagaagcaaatgtcagttttccggtatatatttacttttgctaacaaaaagagttatcccatactcaaagatttct |
42212778 |
T |
|
| Q |
301 |
tgcatagaaaaacatcttacttgtgcctttaagagcttattagtagtctctaaagactgatactctttcaaagccgactcctttttcttttcaccagaaa |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42212777 |
tgcatagaaaaacatcttacttgtgtctttaagagcttattagtagtctctaaagactgatactctttcaaagccaactcctttttcttttcaccagaaa |
42212678 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
|
| |
|
|
| T |
42212677 |
t |
42212677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University