View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8197_low_11 (Length: 251)
Name: NF8197_low_11
Description: NF8197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8197_low_11 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 26452319 - 26452079
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaa |
111 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
26452319 |
ttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaatttgttaaaaa |
26452220 |
T |
|
| Q |
112 |
aaa-cgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaatataaaaggggatcaaatgtcaaaaa |
210 |
Q |
| |
|
||| |||||||| || || ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
26452219 |
aaaacgttaactatgttcaggtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggatgaaatgtcaaaaa |
26452120 |
T |
|
| Q |
211 |
ttagggttttatttgtctcattcctccttctctctgcttct |
251 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
26452119 |
ttagggttttattgatctcattcctccttctctcttcttct |
26452079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 26446535 - 26446671
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaa |
111 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
26446535 |
ttcttctcacttcagtctcttaacttttaaatgtgtcaatttggtcctgtaagtactcttctgtttacttagttggtcctttctattaactttttgaaaa |
26446634 |
T |
|
| Q |
112 |
aaacgttaactctgaacatgtggcactccagcttggc |
148 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||||| |
|
|
| T |
26446635 |
aaacgttaactctgtacaggtggctgtccagcttggc |
26446671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 43583600 - 43583360
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaa |
111 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||| |
|
|
| T |
43583600 |
ttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttacccagttgatcctttctgttaactttttgaaaa |
43583501 |
T |
|
| Q |
112 |
aaa-cgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaatataaaaggggatcaaatgtcaaaaa |
210 |
Q |
| |
|
||| ||||||||||| | | ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
43583500 |
aaaacgttaactctgcataagtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggatgaaatgtcaaaaa |
43583401 |
T |
|
| Q |
211 |
ttagggttttatttgtctcattcctccttctctctgcttct |
251 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
43583400 |
ttagggttttattgatctcattcctccttctctcttcttct |
43583360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 24744424 - 24744664
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaa |
111 |
Q |
| |
|
|||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24744424 |
ttcttctcacttcagttccttaacttttaattgtgtcaatttggtcctgtaagtactcctccgtttacttagttggtcctttctgttaactttttgaaaa |
24744523 |
T |
|
| Q |
112 |
a-aacgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaatataaaaggggatcaaatgtcaaaaa |
210 |
Q |
| |
|
| |||||||||| || ||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
24744524 |
aaaacgttaactatgtacaggtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggatgaaatgtcaaaaa |
24744623 |
T |
|
| Q |
211 |
ttagggttttatttgtctcattcctccttctctctgcttct |
251 |
Q |
| |
|
||||||||| ||| || ||||||||||||||||| ||||| |
|
|
| T |
24744624 |
ttagggtttcattgatcacattcctccttctctcttcttct |
24744664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 148
Target Start/End: Original strand, 43579710 - 43579847
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttt-tcaa |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43579710 |
ttcttctcacttcagtcccttaactattaaatgtttcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaactttttgaaaa |
43579809 |
T |
|
| Q |
111 |
aaaacgttaactctgaacatgtggcactccagcttggc |
148 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43579810 |
aaaacgttaactctgaacatgtggcagtccagcttggc |
43579847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 24750117 - 24749981
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaa |
111 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24750117 |
ttcttctcacttcagtcccttaacttttaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaactttttgaaaa |
24750018 |
T |
|
| Q |
112 |
aaacgttaactctgaacatgtggcactccagcttggc |
148 |
Q |
| |
|
||||||||||||| ||| ||||| |||||| |||| |
|
|
| T |
24750017 |
caacgttaactctgtacaggtggctgtccagcatggc |
24749981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 41522755 - 41522706
Alignment:
| Q |
31 |
ttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttact |
80 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
41522755 |
ttaactattaagtgtgtcaatttggtcctataagtcttctgccgtttact |
41522706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 9190525 - 9190481
Alignment:
| Q |
15 |
ttctcacttcagtctcttaactattaaatgtgtcaatttggtcct |
59 |
Q |
| |
|
|||||| || |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
9190525 |
ttctcagtttagtcccttaactattaaatgtttcaatttggtcct |
9190481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 21006170 - 21006410
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaa |
111 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||| ||| |
|
|
| T |
21006170 |
ttcttctcactttagtcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttacccagttgatcctttcagttaactttttgaaaa |
21006269 |
T |
|
| Q |
112 |
a-aacgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaatataaaaggggatcaaatgtcaaaaa |
210 |
Q |
| |
|
| ||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
21006270 |
aaaacgttaactctgcacaagtggctgtccacgttggccaatcacttgaggacatggcaaatcactatcagcaatataaaaggggatgaaatgtcaaaaa |
21006369 |
T |
|
| Q |
211 |
ttagggttttatttgtctcattcctccttctctctgcttct |
251 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
21006370 |
ttagggttttattgatctcattcctccttctctcttcttct |
21006410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 148
Target Start/End: Complemental strand, 21011894 - 21011757
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttt-tcaa |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
21011894 |
ttcttctcacttcagtcccttaactattaaatgtttcaatttggtcctgtcagtactcttctgtttacttagttggtcctttctgttaactttttgaaaa |
21011795 |
T |
|
| Q |
111 |
aaaacgttaactctgaacatgtggcactccagcttggc |
148 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21011794 |
aaaacgttaactctgaacatgtggcagtccagcttggc |
21011757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 30253637 - 30253724
Alignment:
| Q |
33 |
aactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaa-cttttttcaaaaaacgtta |
119 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| || ||| |||||||||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
30253637 |
aactattaagtgtgtcaatttggtctcataagtcttcctccatttacttagttggtccattttgttaagtttttttcaaaaaacgtta |
30253724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 8284327 - 8284283
Alignment:
| Q |
15 |
ttctcacttcagtctcttaactattaaatgtgtcaatttggtcct |
59 |
Q |
| |
|
|||||| || ||||||||||||||||||||| | ||||||||||| |
|
|
| T |
8284327 |
ttctcagtttagtctcttaactattaaatgttttaatttggtcct |
8284283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 185
Target Start/End: Complemental strand, 32960301 - 32960126
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttc--- |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||| |||| |||||||| ||||||||||| |
|
|
| T |
32960301 |
ttcttctcacttcagttccttaactattaaatgtgtcaatttggtcctcta--tactctttcgtttacccagttaatcctttctattaacttttttttaa |
32960204 |
T |
|
| Q |
109 |
-aaaaaacgttaactctgaacatgtggcactccagcttggccaatcacttgaggacatggcaaatcactgtcagcaat |
185 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
32960203 |
aaaaaaactttaactctgcacatgtggttctccatgttggccaatcacttgaggacatggaaaatcactctcagcaat |
32960126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 24502071 - 24501948
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaa |
111 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| ||| |
|
|
| T |
24502071 |
ttcttctcacttcattcccttaacttttaaatgtgtcaatttggtcctgtaagttctcttccgtttacccagttgatcctttctgttaactttttgaaaa |
24501972 |
T |
|
| Q |
112 |
aaacgttaactctgaacatgtggc |
135 |
Q |
| |
|
||||||||| |||| ||| ||||| |
|
|
| T |
24501971 |
aaacgttaagtctgtacaggtggc |
24501948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 48332745 - 48332836
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaactt |
103 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48332745 |
ttcttctcacttcagtcccttaactattaaatgtttcaatttggtcctataaatactcttccgtttacttagttggtcctttctgttaactt |
48332836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 43190549 - 43190474
Alignment:
| Q |
47 |
tcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaaaaacgttaact |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | |||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
43190549 |
tcaatttggtcctgtaagtatacttccgtttatccaactggtcctttctgttaatttttgtcaaaaaacgttaact |
43190474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 32959886 - 32959935
Alignment:
| Q |
23 |
tcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttc |
72 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||| ||||| |||||||| |
|
|
| T |
32959886 |
tcagtctcttaactattaaatgtattaatctggtcatgtaaatactcttc |
32959935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 7338172 - 7338302
Alignment:
| Q |
12 |
ttcttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaa |
111 |
Q |
| |
|
|||||||||||||| || |||||| ||||||||||||||||| ||||||||||| ||||||||||| | |||| |||||| ||||||||||||||||| |
|
|
| T |
7338172 |
ttcttctcacttcaatcccttaacaattaaatgtgtcaatttagtcctgtaagttctcttccgtttgcccggttgatcctttttgttaacttttttcaaa |
7338271 |
T |
|
| Q |
112 |
aaacgttaactctgaacatgtggcactccag |
142 |
Q |
| |
|
||||||||||| || | |||||||||||||| |
|
|
| T |
7338272 |
aaacgttaactatgtatatgtggcactccag |
7338302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 47928503 - 47928469
Alignment:
| Q |
25 |
agtctcttaactattaaatgtgtcaatttggtcct |
59 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |
|
|
| T |
47928503 |
agtctcttaactattaaatgtttcaatttggtcct |
47928469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 48866174 - 48866272
Alignment:
| Q |
15 |
ttctcacttcagtctcttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttacttagttggtcctttctgttaacttttttcaaaaa |
113 |
Q |
| |
|
|||||| || |||| || ||||||||| ||||||||||||||||| ||||| ||||||||||||| | ||||||| || |||| |||||||||||| |
|
|
| T |
48866174 |
ttctcagtttagtccctgaactattaagtgtgtcaatttggtcctataagtcttcttccgtttactaatatggtcctctccgttagtttttttcaaaaa |
48866272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 2224975 - 2225012
Alignment:
| Q |
85 |
tggtcctttctgttaacttttttcaaaaaacgttaact |
122 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
2224975 |
tggtcctttctgttaatttttatcaaaaaacgttaact |
2225012 |
T |
|
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 7983763 - 7983713
Alignment:
| Q |
30 |
cttaactattaaatgtgtcaatttggtcctgtaagtactcttccgtttact |
80 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
7983763 |
cttaactattaagtgtgtcaatttggtcctataagtcttctaccgtttact |
7983713 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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