View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8197_low_12 (Length: 245)
Name: NF8197_low_12
Description: NF8197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8197_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 34832663 - 34832869
Alignment:
| Q |
23 |
atggccacatgaggggcaagttagggttcgaacttcggttggttttgtttcatcatctgtaacaagagtactttcattgctagttccaggaataacagta |
122 |
Q |
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| T |
34832663 |
atggccacatgaggggcaagttagggttcgaacttcggttggttttgtttcatcatctgtaacaagagtactttcattgctagttccaggaataacagta |
34832762 |
T |
|
| Q |
123 |
gatgttattagttcaatgcccctatcttgatcatctgagtcattgcaccatgtcatgatctctttaattgggattttccaattctatcaacataaaaaca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34832763 |
gatgttattagttcaatgcccctatcttgatcatctgagtcattgcaccatgtcatgatctctttaattgggattttccaattctatcaacataaaaaca |
34832862 |
T |
|
| Q |
223 |
aagctct |
229 |
Q |
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||||||| |
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| T |
34832863 |
aagctct |
34832869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 229
Target Start/End: Original strand, 28951356 - 28951562
Alignment:
| Q |
23 |
atggccacatgaggggcaagttagggttcgaacttcggttggttttgtttcatcatctgtaacaagagtactttcattgctagttccaggaataacagta |
122 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28951356 |
atggccacatgaggggcaagttagagttcgaacttcggttggttttgtttcatcatctgtaacaagaggactttcattgctagttccaggaataacagta |
28951455 |
T |
|
| Q |
123 |
gatgttattagttcaatgcccctatcttgatcatctgagtcattgcaccatgtcatgatctctttaattgggattttccaattctatcaacataaaaaca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28951456 |
gatgttattagttcaatgcccctatcttgatcatctgagtcattgcaccatgtcatgatccctttaattgggattttccaattctatcaacataaaaaca |
28951555 |
T |
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| Q |
223 |
aagctct |
229 |
Q |
| |
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||||||| |
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| T |
28951556 |
aagctct |
28951562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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