View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8197_low_4 (Length: 429)
Name: NF8197_low_4
Description: NF8197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8197_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 204 - 425
Target Start/End: Original strand, 15973797 - 15974018
Alignment:
| Q |
204 |
aatgagtctacatgttttcagacggcataaaaactttgttttttcataaagtatactccttttgctggggaaataaaattcacaagataattagagtcaa |
303 |
Q |
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| T |
15973797 |
aatgggtctacatgttttcagacggcataaaaactttgttttttcagaaagtatactcattttgctggggaaataaaattcacaagataattagagtcaa |
15973896 |
T |
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| Q |
304 |
tcccaaccatatggaagaaattttcccaacctgcttcattgaatttagagcagagaactacaacaaaacatgttatgacggacatagaccctctattgct |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
15973897 |
tcccaaccatatggaagaaattttcccaacctgcttcattgaatttagagcaaagaactacaacaaaaaaagttatgacggacatagaccctctattgct |
15973996 |
T |
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| Q |
404 |
ccctctaccaaaacaccaaact |
425 |
Q |
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| T |
15973997 |
ccctctaccaaaacaacaaact |
15974018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 15973491 - 15973658
Alignment:
| Q |
19 |
caaatgggctacctacttgttatggatccagattttgttgggttgggccaaaaagcattatttaaacagggaacattataccatgtaccactacacttat |
118 |
Q |
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| T |
15973491 |
caaatgggctacctgtttgttatggatccagattttgttgggttgggccaaaaagtattatttaaacagggaacattataccatgtaccactacacttat |
15973590 |
T |
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| Q |
119 |
actttgacctctacaaaggacaaaccataaaacatcccctataccccacaaaacattttctatggcaa |
186 |
Q |
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| T |
15973591 |
actttgacctctacaaaggacaaaccattaaacatcccctataccccacaaaacattttctatggcaa |
15973658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 8267582 - 8267452
Alignment:
| Q |
20 |
aaatgggctacctacttgttatggatccagattttgttgggttgggccaaaaagcattatttaaacagggaacattataccatgtaccactacacttata |
119 |
Q |
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| T |
8267582 |
aaatgggctacatgtttgttttggattcgaattttgttgggttagaccagaaagccttatttaaatacgaaacattataccatgtactactacacttata |
8267483 |
T |
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| Q |
120 |
ctttgacctctacaaaggacaaaccataaaa |
150 |
Q |
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| T |
8267482 |
ctttcacctctacaaaggacaaactataaaa |
8267452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 35 - 155
Target Start/End: Original strand, 15997773 - 15997893
Alignment:
| Q |
35 |
ttgttatggatccagattttgttgggttgggccaaaaagcattatttaaacagggaacattataccatgtaccactacacttatactttgacctctacaa |
134 |
Q |
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| T |
15997773 |
ttgttatggattctgattttgttgggttgggccagaaagccttatttaaatatggaacattataacatgcaccgctacacttatacttccacctctataa |
15997872 |
T |
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| Q |
135 |
aggacaaaccataaaacatcc |
155 |
Q |
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|| ||||| ||||||| |||| |
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| T |
15997873 |
agaacaaagcataaaatatcc |
15997893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 14635622 - 14635678
Alignment:
| Q |
51 |
ttttgttgggttgggccaaaaagcattatttaaacagggaacattataccatgtacc |
107 |
Q |
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|||||||||| |||| |||||||| ||||||||| | ||||||||||| |||||||| |
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| T |
14635622 |
ttttgttgggctgggtcaaaaagccttatttaaatatggaacattatatcatgtacc |
14635678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 12065692 - 12065746
Alignment:
| Q |
20 |
aaatgggctacctacttgttatggatccagattttgttgggttgggccaaaaagc |
74 |
Q |
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| T |
12065692 |
aaatgggctacctgtttgttatggattcgggttttgttgggttgggccagaaagc |
12065746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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