View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8197_low_6 (Length: 389)
Name: NF8197_low_6
Description: NF8197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8197_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 26653153 - 26652854
Alignment:
| Q |
20 |
catgttggtgtgttagccacacctccgtgtttgctattaagttgttttcttggaatgttgagcttcttcatagtatctt-ctaatgcttgttcattcatc |
118 |
Q |
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| T |
26653153 |
catgttggtgtgttagccacacctccgtgtttgctattaagttgttttcttgcaatgttgagcttcttcatagtatatttctaatgcttgttcattcatc |
26653054 |
T |
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| Q |
119 |
atgggtataacactcaactttcaaaacaaaaatggttacattgcttaatttggaaaggctacgttattggccacaaaaattgtactacagtgtataccaa |
218 |
Q |
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| T |
26653053 |
atgggtataacactcaactttcaaaacaaaaatggttactttgcttaatttggaaaggctacgttgttggccacaaaaattgtactacagtgtatacgaa |
26652954 |
T |
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| Q |
219 |
gggaaaatgaatggtgaatgtgtgaaaaccccaatgtatcctttgttgctagtaattctcacattaaagaaggtgccatttcaattaagtttaggggcaa |
318 |
Q |
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| T |
26652953 |
gggagaatgaatggtgaatgtgtgaaaaccccaatgtatcctttgttgctagtaattctcacattaaacaaggtgccatttgaattaagtttaggggcaa |
26652854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 318
Target Start/End: Complemental strand, 26646277 - 26646193
Alignment:
| Q |
234 |
gaatgtgtgaaaaccccaatgtatcctttgttgctagtaattctcacattaaagaaggtgccatttcaattaagtttaggggcaa |
318 |
Q |
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| T |
26646277 |
gaatgtgtgaaaacccagatgtatcctttgcttctagtaattttcaaaacaaacaatgtgccattttaattaagtttaggggcaa |
26646193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 26646459 - 26646345
Alignment:
| Q |
89 |
atagtatcttctaatgcttgttcattcatcatgggtataacactcaacttt-caaaacaaaaatggttacattgcttaatttggaaaggctacgttattg |
187 |
Q |
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| T |
26646459 |
atagtatcttccaatgtttgttcattcatcatgggtatcacactcagctttaaaaaaaaaaaatggtta-----ctttctttgcaaaggctacgttgttg |
26646365 |
T |
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| Q |
188 |
gccacaaaaattgtactaca |
207 |
Q |
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| T |
26646364 |
gcaacaaaatttgtagtaca |
26646345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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