View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8197_low_8 (Length: 296)
Name: NF8197_low_8
Description: NF8197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8197_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 11011840 - 11011559
Alignment:
| Q |
1 |
aaagaacttcagtgagtactacattagcacaattatttctgattaggttgtgaaagagtcgcacattacacgtgcatgcatgcatgatcatgtacaccgt |
100 |
Q |
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| T |
11011840 |
aaagaacttcagtgagtactacattagcacaattatttctgattaggttgtgaaagagtcgcacattacacgtgcatgcatgcatgatcatgtacaccgt |
11011741 |
T |
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| Q |
101 |
cacatccttgcaagtaggtgatcacagacatgcatacttgcattgcagtgaactactatcaagaactgagtcctaatttatcaattgagccagaagaaaa |
200 |
Q |
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| T |
11011740 |
cacatccttgcaagtaggtgatcacagacatgcatacttgcattgcagtgaactactatcaagaactgagtcctaatttatcaattgagccagaagaaaa |
11011641 |
T |
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| Q |
201 |
gagacaaaaatagaaaagtgaactactacctccaaaaaccactaaagccgcaacaaaccgccaaacactatctaaggaacat |
282 |
Q |
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| T |
11011640 |
gagacaaaaatagaaaagtgaactactacctctaaaaaccactacagccgcaacaaaccgccaaacactatctaaggaacat |
11011559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 11001297 - 11001176
Alignment:
| Q |
33 |
ttatttctgattaggttgtgaaagagtcgcacattacacgtgcatgcatgcatgatcatgtacaccgtcacatccttgcaagtaggtgatca---cagac |
129 |
Q |
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| T |
11001297 |
ttatttctaattaggttgtgaaagtgtcgcacattacacgtgcatg----catgatcatgtacactgtcacatccctgccagtaggtgatcacagcaggc |
11001202 |
T |
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| Q |
130 |
atgcatacttgcattgcagtgaacta |
155 |
Q |
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| T |
11001201 |
atgtatacttgcattgcagtgaacta |
11001176 |
T |
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