View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_high_21 (Length: 209)
Name: NF8198_high_21
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 192
Target Start/End: Original strand, 5828805 - 5828985
Alignment:
| Q |
12 |
gagaagaacaataaaagaagacacaataaccaaagagaagaaccaaccgtctaatagagagaggaactaataaagaggagcaaccaaaaaattcaaatac |
111 |
Q |
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| T |
5828805 |
gagaagaacaataaaagaagacacaataaccaaagagaagaaccaactgtctaatagagagaggaactaataaagaggagcaacaaaaaaattcaaatac |
5828904 |
T |
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| Q |
112 |
atcgtcaataaagacttttcacaaacacattatcaacaataacttgactcaccaaattatccaaaaaatacaccttaatag |
192 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828905 |
atcatcaataaagacttttcacaaacacattatcaacaataacttgactcaccaaattatccaaaaaatacaccttaatag |
5828985 |
T |
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