View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_high_3 (Length: 560)
Name: NF8198_high_3
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 30524996 - 30525219
Alignment:
| Q |
17 |
acttatgtctcaaaaaatatcctttgacctcaatcattcataatctagatattagccaactacagcaatttccatgttccctctatacaaaaatcttgtt |
116 |
Q |
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| T |
30524996 |
acttatgtctcaaaaaatatcctttgacctcaatcattcataatctagatattagccaactacagcaatttccatgttccctctatacaaaaatcttgtt |
30525095 |
T |
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| Q |
117 |
ctgtgtaggaccatgtgccagaacataatgcagatattaaaattccatgtggaacaacaaacaattttaaacagggtacaaaaatacaaattattggaga |
216 |
Q |
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| T |
30525096 |
ctgtgtaggaccatgtgccagaacataatgcacatattaaaattccatgtggaacaacaaacaattttaaacagggtacaaaaatacaaattattggag- |
30525194 |
T |
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| Q |
217 |
aaactgccccactgagtattaattg |
241 |
Q |
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| T |
30525195 |
aaactgccccactgagtattaattg |
30525219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 241 - 389
Target Start/End: Original strand, 30525265 - 30525412
Alignment:
| Q |
241 |
gtctatcttaccttaccttaaagatttccataaaagaacaatgggtactcgcaatataaatgtaggcatagggaatcaaatcaaaattagtcacaataca |
340 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
30525265 |
gtctatcctaccttaccttaaagatttccataaaagaacaatgggtactcgcaatataaatgtaggcatagggaatcaaatc-aaattagtcacagtaca |
30525363 |
T |
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| Q |
341 |
agaactaccaacacattatgctattttattaaaatagttgagtctacat |
389 |
Q |
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| T |
30525364 |
agaactaccaacacattatgctattttattaaaatagttgagtctacat |
30525412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 448 - 549
Target Start/End: Original strand, 30525471 - 30525572
Alignment:
| Q |
448 |
ccttattatatagaacacttttagcaaaatcaaaccatatccaacattcctgactagcacagattttgccaaaaccataggccaaggtagctgaccacca |
547 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30525471 |
ccttattatatagaacacttttagcaaaatcaaaccatatccaacattcctgactagcacagattttgccaaaaccataggccaaggtagctgaccacca |
30525570 |
T |
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| Q |
548 |
aa |
549 |
Q |
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|| |
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| T |
30525571 |
aa |
30525572 |
T |
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