View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8198_low_1 (Length: 756)
Name: NF8198_low_1
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 19 - 330
Target Start/End: Complemental strand, 28714000 - 28713689
Alignment:
| Q |
19 |
acacacatgcttgcaagctgcaagcattgctggtattagacattatgtgatggttgtgattctccatagaatctcatccatttttatgcctaactttttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28714000 |
acacacatgcttgcaagctgcaagcattgctggtattagacattatgtgatggttgtgattctccatagaatctcatccatttttatgcctaactttttc |
28713901 |
T |
|
| Q |
119 |
aacatcaacctctgaactcaaacgatgattaggaagtgatcagtgtctgacaatggcacgacgccgagacatgtggttacatgcatttttattccatttt |
218 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28713900 |
aacatcaacctctgaactcaaacaatgattaggaagtgatcagtgtctgacaatggcacgacgccgagacatgtggttacatgcatttttattccatttt |
28713801 |
T |
|
| Q |
219 |
ctcaaattattatcggtgttgacagtgcttgtatgtgtgttagtgctctgtagattttaacattaatagattcttttctcggaagttatcatcgcgatga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28713800 |
ctcaaattattatcggtgttgacagtgcctgtatgtgtgttagtgctctgtagattttaacattaatagattcttttctcggaagttatcatcgcgatga |
28713701 |
T |
|
| Q |
319 |
attcatgcaatt |
330 |
Q |
| |
|
|||||||||||| |
|
|
| T |
28713700 |
attcatgcaatt |
28713689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 361 - 548
Target Start/End: Complemental strand, 28713657 - 28713470
Alignment:
| Q |
361 |
tggcaatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagatggtctagcca |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
28713657 |
tggcaatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagctggcctagcca |
28713558 |
T |
|
| Q |
461 |
tgaatgcttgccaagcctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtgtttcctgtcc |
548 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28713557 |
tgaatgcttgccaagtctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtgtttcctgtcc |
28713470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 615 - 746
Target Start/End: Complemental strand, 28713401 - 28713270
Alignment:
| Q |
615 |
actcctccatccaacataccacccttcaactgttccactatatcataacataagggtcccctaagatgcagccgagtgctgacttagaaggagagtatta |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28713401 |
actcctccatccaacataccacccttcaactgttccactatatcataacataagggtcccctaagatgcagccgagtgctgacttagaaggagagtatta |
28713302 |
T |
|
| Q |
715 |
agaaggaggtttggggttcgatctctgctact |
746 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
28713301 |
agaaggaggttcggggttcgatctctgctact |
28713270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 365 - 538
Target Start/End: Original strand, 48904681 - 48904854
Alignment:
| Q |
365 |
aatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagatggtctagccatgaa |
464 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| ||| ||| | ||||||||||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
48904681 |
aatacctaacaccaagtatgagagctgcttccctcttcgtcatagtaggctgaaaaccaccttcataaaatttacgcaatgcaggtggtctagctttgaa |
48904780 |
T |
|
| Q |
465 |
tgcttgccaagcctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtg |
538 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
48904781 |
tgcttgccaagcctggataccatatttaccggcatatgctgcagcagccacagcaatcccagcaattaaaggtg |
48904854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 18570997 - 18570966
Alignment:
| Q |
213 |
cattttctcaaattattatcggtgttgacagt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18570997 |
cattttctcaaattattatcggtgttgacagt |
18570966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 18919056 - 18919085
Alignment:
| Q |
213 |
cattttctcaaattattatcggtgttgaca |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18919056 |
cattttctcaaattattatcggtgttgaca |
18919085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University