View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_11 (Length: 315)
Name: NF8198_low_11
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 48452590 - 48452887
Alignment:
| Q |
1 |
tgaaatttttggattaaggttcttgtttcacaaaattatcggggagtagtcaaagtgcatactattgcaatgattacaagtaatagcattttgagctaca |
100 |
Q |
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| T |
48452590 |
tgaaatttttggattaaggttcttgtttcataaaattattggggagtagtcaaagtgcatactattgcaatgattacaagtaatagcattttgagctaca |
48452689 |
T |
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| Q |
101 |
tcaatattaatattgttctctcattaatatgaaacatggaaaaccattatacgttcttatatgagcacgagtttttctcgtccaacttcatcttcacctt |
200 |
Q |
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| T |
48452690 |
tcaatattaatattgttctctcattaatatgaaacatggaaaaccattatacattcttatatgagcacgagtttttctcgtccaacttcatcttcacctt |
48452789 |
T |
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| Q |
201 |
ggagtttttcaatgatcccttgacacccattttgaaaccacacaggatcataatttcaatctgatgagtgatcttctctccaatagggactcaagttt |
298 |
Q |
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| T |
48452790 |
ggagtttttcaatgatcccttgacacccattttgaaaccacacaggatcataatttcaatccgatgagtgatcttctctccaatagggactcaagttt |
48452887 |
T |
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Back To:
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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 247
Target Start/End: Complemental strand, 50460528 - 50460453
Alignment:
| Q |
172 |
tttttctcgtccaacttcatcttcaccttggagtttttcaatgatcccttgacacccattttgaaaccacacagga |
247 |
Q |
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|||||||||||||||| ||||||||| ||| || |||| | |||| |||||||||||||||| ||||||||||| |
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| T |
50460528 |
tttttctcgtccaactacatcttcactttgaagcttttgtctaatcctttgacacccattttgagaccacacagga |
50460453 |
T |
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