View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_12 (Length: 301)
Name: NF8198_low_12
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 22776371 - 22776086
Alignment:
| Q |
1 |
caaggaagcagggtttcaccaggtagttaacacttaacactaacaacaagtcaatttctcaccattaacactcctaaacaatacgtcaattgggtaggga |
100 |
Q |
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| T |
22776371 |
caaggaagcagggtttcaccaggtagttaacacttaacactaataacaagtcaatttctcatcattaacactcctaaacaatacgtcaattgggtaggga |
22776272 |
T |
|
| Q |
101 |
ttttatcagtttcacatgcataaattgagaactctattggtatagtattgttcaagatgtataaagtaaacatttttct-aaataaaaattgctattttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
22776271 |
ttttatcagtttcacatgcataaattgagaactctaatggtatagtattgttcaagatgtataaagtaaacatttttctaaaaaaaaaattgctattttt |
22776172 |
T |
|
| Q |
200 |
tacaatagattattgaacaaatcttgcacaaatccatgttacattttttaatagcattgctcttttagaaatgttggcatagttag |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22776171 |
tacaatagattattgaacaaatcttgcacaaatccatgttacattttttaatagcattgctcttttagaaatgttggcatagttag |
22776086 |
T |
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