View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8198_low_14 (Length: 277)
Name: NF8198_low_14
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_14 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 50606447 - 50606205
Alignment:
| Q |
17 |
gtagcttgactaaaaattactaggcattcatagtttaaaacagatatataatgactcagtatcaacattcaacactagtaataccgcctaagggctgctg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50606447 |
gtagcttgactaaaaattactaggcattcatagtttaaaacagatatataatgactcagtatcaacattcaacactagtaataccgcctaagggctgctg |
50606348 |
T |
|
| Q |
117 |
ccaccaccggctccagcgccaccgccaactccaataccagcaccgactccaaagccgcctcctccgccaaaaccacctcctccaccaccgccgactcctc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50606347 |
ccaccaccggctccagcgccaccgccaactccaataccagcaccgactccaaagccgcctc------------------ctccaccaccgccgactcctc |
50606266 |
T |
|
| Q |
217 |
ccccaaggcctactccttttccaaatccaccaccagcaccaacccctccaccagcacctcc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50606265 |
ccccaaggcctactccttttccaaatccaccaccaacaccaacccctccaccagcacctcc |
50606205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University