View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_15 (Length: 276)
Name: NF8198_low_15
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 38877038 - 38877286
Alignment:
| Q |
18 |
aatatgcaccactatacaatagcaaagatgcactaacttatagactgaagaatactcaaagatgcaccactatacaattttgaaaactgatgaaatcaat |
117 |
Q |
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| T |
38877038 |
aatatgcaccactatacaatagcaaagatgcactaacttatagactgaagaatactcaaagatgcaccactatacaattttgaaaactgatgaaatcaat |
38877137 |
T |
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| Q |
118 |
gtgactcctcaaaccaaacttcaaaaagcagaggtta-atattctcagaactacttaaaatagcaacgtactgaaatttaagatcaagaacttaaacttc |
216 |
Q |
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| T |
38877138 |
gtgactcctcaaaccaaacttcaaaaagcagaggttacatattctcagaactacttaaaatagcaacgtactgaaatttaagatcaagaacttaaacttc |
38877237 |
T |
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| Q |
217 |
aagatctttgattttaccgaacataaacgatgcttaattgtgaattcat |
265 |
Q |
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| T |
38877238 |
aagatctttgattttaccgaacataaacgatgcttaattgtgaattcat |
38877286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 125 - 265
Target Start/End: Original strand, 38584500 - 38584641
Alignment:
| Q |
125 |
ctcaaaccaaacttcaaaaagcagaggtta-atattctcagaactacttaaaatagcaacgtactgaaatttaagatcaagaacttaaacttcaagatct |
223 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| ||| |||||||||||||| |||||| |||||| |||||| |
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| T |
38584500 |
ctcaaaccaaacttcaaaaagcagagattacatattctcagaaatacttaaaatagcaatgtaatgaaatttaagatcgagaactccaacttctagatct |
38584599 |
T |
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| Q |
224 |
ttgattttaccgaacataaacgatgcttaattgtgaattcat |
265 |
Q |
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| T |
38584600 |
ctgattttaccgaacataaacgaagcttaattgtgaattcat |
38584641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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