View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_17 (Length: 250)
Name: NF8198_low_17
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 36526893 - 36527136
Alignment:
| Q |
6 |
gtatggtgttattctgtttatattgtaaaatgatcgatgacttgactaagtaaaatggaatttgtggttataattcaactatcgagtagttagaggtaga |
105 |
Q |
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| T |
36526893 |
gtatggtgttattctgtttatattgtaaaatgatcgatggcttgactaagtaaaatggaatttgtggttataattcaactatcgagtagttagaggtaga |
36526992 |
T |
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| Q |
106 |
gttagttagtaactaactagtttgttatgagttggttggcttacttgttattcaagtaagagatgatgtctataaatacttttatcttttgtaccgtatg |
205 |
Q |
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| T |
36526993 |
gttagttagtaactaactagtttgttatgagttggttagcttacttgttattcaagtaagagatgatgtctataaatacttttatcttttgtaccgtatg |
36527092 |
T |
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| Q |
206 |
aaccactcaattcataatcaacaaagtacaagttatacaatctt |
249 |
Q |
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| T |
36527093 |
aaccactcaattcataatcaacaaagtacaagttatacactctt |
36527136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 47565444 - 47565349
Alignment:
| Q |
74 |
tataattcaactatcgagtagttagaggtagagttagttagtaactaactagtttgttatgagttggttggcttacttgttattcaagtaagagat |
169 |
Q |
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| T |
47565444 |
tataattcaactaccaagtagttagaagtagagttagttagtaactaactagtttgttgtgaattagtttgcttacttgttattcaagtaagagat |
47565349 |
T |
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