View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_19 (Length: 242)
Name: NF8198_low_19
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_19 |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 5110831 - 5111062
Alignment:
| Q |
11 |
ttatactcttttcactctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagttctaaaaccatcaccacagatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5110831 |
ttatactcttttcactctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgatttctaaaaccatcaccacagatg |
5110930 |
T |
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| Q |
111 |
aatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcctcttctacttcttctttctcttcatg |
210 |
Q |
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| T |
5110931 |
aatttgcacttcttgcattcaaatcctcaattaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttctcttcatg |
5111030 |
T |
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| Q |
211 |
caattgggttggtgttacttgtgatgaacatc |
242 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5111031 |
caattgggttggtgttacttgtgatgaacatc |
5111062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 5084243 - 5084009
Alignment:
| Q |
11 |
ttatactcttttcactctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagttct---aaaaccatcaccacag |
107 |
Q |
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| T |
5084243 |
ttatactcttttcactcttgcctctgtattctctctacttcactctattattatttcttcacttgcttagctataagtagtaaaaaaaacatcaccacag |
5084144 |
T |
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| Q |
108 |
atgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcctcttctacttcttctttctcttc |
207 |
Q |
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| T |
5084143 |
atgaattttcacttcttgcattcaaatcctcaattaccttagatccttatcatatgcttagaaattggtcaatttcctcttctacttcttctttctcttc |
5084044 |
T |
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| Q |
208 |
atgcaattgggttggtgttacttgtgatgaacatc |
242 |
Q |
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| T |
5084043 |
atgcaattgggttggtgttacttgtgatgaacatc |
5084009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 5093827 - 5094057
Alignment:
| Q |
11 |
ttatactcttttcactctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagttctaaaaccatcaccaca--ga |
108 |
Q |
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| T |
5093827 |
ttatactcttttcactcttggctctgtattctctctgcttcactctattattacttcttcacttg-ttagttgtgagtagtaaaaaaaacataaaaccga |
5093925 |
T |
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| Q |
109 |
tgaatttgcacttcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcctcttctacttcttctttctcttca |
208 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5093926 |
tgaattttcacttcttgcattcaaatcctcaataaccttagacccttatgatattcttagtaattggtcaatttcctcttctacttcttctttgtcttca |
5094025 |
T |
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| Q |
209 |
tgcaattgggttggtgttacttgtgatgaaca |
240 |
Q |
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| T |
5094026 |
tgcaattgggttggtgttacttgtgatgaaca |
5094057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 242
Target Start/End: Complemental strand, 14428012 - 14427791
Alignment:
| Q |
24 |
actctttgctctttattctctctgcctcactctattattacctcttcacttgcttagctatgagttctaa---aaccatcaccacagatgaatttgcact |
120 |
Q |
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|||||| |||||||||||| ||||||||| | ||||||||| ||||||||||||||||| ||||| ||| || | | ||||| ||||||||| |||| |
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| T |
14428012 |
actcttggctctttattctttctgcctcaatttattattacttcttcacttgcttagctgtgagtagtaagaaaaacctaaccaccgatgaattttcact |
14427913 |
T |
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| Q |
121 |
tcttgcattcaaatcctcaattaccttagacccttatcacattcttagtaattggtcaatttcctcttctacttcttctttctcttcatgcaattgggtt |
220 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
14427912 |
tcttgcattcaaatcctcaattaccttagatccttatcatattcttagtaattggtcaatttccacttctgcttcttctttctcttcatgcaattgggtt |
14427813 |
T |
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| Q |
221 |
ggtgttacttgtgatgaacatc |
242 |
Q |
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|||||||||||||||||||||| |
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| T |
14427812 |
ggtgttacttgtgatgaacatc |
14427791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 39 - 242
Target Start/End: Original strand, 16872299 - 16872505
Alignment:
| Q |
39 |
ttctctctgcctcactctattattacctcttcacttgcttagctatgagttctaa---aaccatcaccacagatgaatttgcacttcttgcattcaaatc |
135 |
Q |
| |
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|||||| || |||||| |||||||| ||||||||||||||||||||||| |||| || |||||||| |||||||||| ||||||||||||||||||| |
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| T |
16872299 |
ttctctatgtctcactgcattattacttcttcacttgcttagctatgagtactaacaaaaacatcaccatagatgaattttcacttcttgcattcaaatc |
16872398 |
T |
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| Q |
136 |
ctcaattaccttagacccttatcacattcttag---taattggtcaatttcctcttctacttcttctttctcttcatgcaattgggttggtgttacttgt |
232 |
Q |
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||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||| ||||| |||||||||||||| |||||| |
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| T |
16872399 |
ctctattaccttagacccttatcacaagcttagtaataattggtcaatctcctcttcta---cttctttctcatcatgtaattgggttggtgtcacttgt |
16872495 |
T |
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| Q |
233 |
gatgaacatc |
242 |
Q |
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||||| |||| |
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| T |
16872496 |
gatgagcatc |
16872505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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