View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_2 (Length: 682)
Name: NF8198_low_2
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 29258490 - 29258847
Alignment:
| Q |
1 |
cgtctccttcttcgtcttcatctcctctttccccctacatagctgcagcaggtttagatcccatgtcgtttttaaactccagtggctctgcggcggctta |
100 |
Q |
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| T |
29258490 |
cgtctccttcttcgtcttcatctcctctttccccctacatagctgcaggaggtttagatcccatgtcgtttttaaactccagtggctctgcggcggctta |
29258589 |
T |
|
| Q |
101 |
tcgagccgccgtagccacaaggtttaataacgagcctttcaaatctcatcaatatccattgcaccaccatcatcatcatcactcacactatggtagtgtt |
200 |
Q |
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| T |
29258590 |
tcgagccgccgtagccacaaggtttaataacgaacctttcaaatctcatcaatatccattgcaccaccatcatcatcatcactcacactatggtagtgtt |
29258689 |
T |
|
| Q |
201 |
ggacttggaagctcagaagcatccatgatgagatcaaggtttttgcctaaattaccgacaaaaagaagcatgagagcaccaagaatgcgatggacaagta |
300 |
Q |
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| T |
29258690 |
ggacttggaagctcagaagcatccatgatgagatcaaggtttttgcctaaattaccgacaaaaagaagcatgagagcaccaagaatgcgatggacaagta |
29258789 |
T |
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| Q |
301 |
ctcttcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagtaaaca |
358 |
Q |
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| T |
29258790 |
ctcttcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagtaaaca |
29258847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 29258889 - 29258954
Alignment:
| Q |
400 |
agagacagtgatactaatgaccattttacacctgtatcagatttgatcttcgtcttttgagattac |
465 |
Q |
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| T |
29258889 |
agagacagtgatactaatgaccattttacacctgtatcagatttgatcttcgttttttgagattac |
29258954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 530 - 572
Target Start/End: Original strand, 29259044 - 29259086
Alignment:
| Q |
530 |
gagtgttgtttagtacttgttacttgtgagagtgagactaaac |
572 |
Q |
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| T |
29259044 |
gagtgttgtttagtacttgttacttgtgagagtgagactaaac |
29259086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 632 - 673
Target Start/End: Original strand, 29259146 - 29259187
Alignment:
| Q |
632 |
gctaatgtaatttagatggtgaattttaggagcaacaccaaa |
673 |
Q |
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| T |
29259146 |
gctaatgtaatttagatggtgaattttaggagcaacaccaaa |
29259187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 259 - 354
Target Start/End: Original strand, 12344516 - 12344611
Alignment:
| Q |
259 |
caaaaagaagcatgagagcaccaagaatgcgatggacaagtactcttcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagta |
354 |
Q |
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| T |
12344516 |
caaaaagaagcatgagagctccaaggatgcgttggactactacacttcatgctcgatttgttcatgctgttgaactcttaggtggccatgaaagta |
12344611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 26580153 - 26580068
Alignment:
| Q |
269 |
catgagagcaccaagaatgcgatggacaagtactcttcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagta |
354 |
Q |
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| T |
26580153 |
catgagggctccaagaatgcggtggactagctcgcttcataatcgatttgttcacgccgttgagcttctcggcggccatgaaagta |
26580068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 27568763 - 27568723
Alignment:
| Q |
315 |
tttgttcatgctgttgagcttcttggtggccatgaaagtaa |
355 |
Q |
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| T |
27568763 |
tttgttcatgctgttgaacttttaggtggccatgaaagtaa |
27568723 |
T |
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