View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_20 (Length: 240)
Name: NF8198_low_20
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 51 - 214
Target Start/End: Complemental strand, 30405154 - 30404991
Alignment:
| Q |
51 |
acttacagaatcaatcaaaattttagaagttttcaagtttccatgtatcacattcacttcatcactatgaagaaatgcaagacccttggcaacatcaaga |
150 |
Q |
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| T |
30405154 |
acttacagaatcaatcaagattttagaagttttcaagtttccatgtatcacattcacttcatcactgtgaagaaatgcaagacccttagcaacatcaaga |
30405055 |
T |
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| Q |
151 |
gctatcttcattcggattttccaagtgagtggctcaaagttagaaacccctgctccattaacat |
214 |
Q |
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| T |
30405054 |
gctatcttcattcggattttccatgtgagtggctgaaagttagaagcccctgctccattaacat |
30404991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 30422219 - 30422025
Alignment:
| Q |
28 |
agctagtaagatcaatgtaactcacttacagaatcaatcaaaattttagaagttttcaagtttccatgtatcacattcacttcatcactatgaagaaatg |
127 |
Q |
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| T |
30422219 |
agctagtaagatcaacgtaatccacttacagaatcaatcaagatgttagaagttttgaagtctcgatatatcacttcgacttcatcactgtgaagaaatg |
30422120 |
T |
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| Q |
128 |
caagacccttggcaacatcaagagctatcttcattcggattttccaagtgagtggctcaaagttagaaacccctgctccattaacataaggtaga |
222 |
Q |
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| T |
30422119 |
caagacccttagcagaatcaagagctatcttcattcggattttccaagagagtggctgaaagtaagaagctcctgatccataaacattaggtaga |
30422025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 214
Target Start/End: Complemental strand, 30408994 - 30408830
Alignment:
| Q |
50 |
cacttacagaatcaatcaaaattttagaagttttcaagtttccatgtatcacattcacttcatcactatgaagaaatgcaagacccttggcaacatcaag |
149 |
Q |
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| T |
30408994 |
cacttactgaaccaatcaagattttcgaagttttgaagtctccatgtatctttcccactttatcactgtgtagaaatgcaagacccttggcagcatcaag |
30408895 |
T |
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| Q |
150 |
agctatcttcattcggattttccaagtgagtggctcaaagttagaaacccctgctccattaacat |
214 |
Q |
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| T |
30408894 |
agctatcttcatacgaattttccaagtgagtggtagaaagttagaaaagcctgctccataaacat |
30408830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 184
Target Start/End: Complemental strand, 30401794 - 30401660
Alignment:
| Q |
50 |
cacttacagaatcaatcaaaattttagaagttttcaagtttccatgtatcacattcacttcatcactatgaagaaatgcaagacccttggcaacatcaag |
149 |
Q |
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| T |
30401794 |
cacttacagaatcaatcaggatattagaagtattgaaatctccatgtatcacattcactttttcactgtgaagaaatgcaagaccctttgcagcatcaag |
30401695 |
T |
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| Q |
150 |
agctatcttcattcggattttccaagtgagtggct |
184 |
Q |
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| T |
30401694 |
agctatcttgattcgcattttccatgagagtggct |
30401660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 31445885 - 31445733
Alignment:
| Q |
49 |
tcacttacagaatcaatcaaaattttagaagttttcaagtttccatgtatcacattcacttcatcactatgaagaaatgcaagacccttggcaacatcaa |
148 |
Q |
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|||||||| ||||||||||| || ||||| ||||| || | ||| ||||||| |||||||||||| | |||||||||||||||||||| ||| |||||| |
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| T |
31445885 |
tcacttactgaatcaatcaagatcttagatgttttaaattctccgtgtatcatattcacttcatcgatgtgaagaaatgcaagacccttagcagcatcaa |
31445786 |
T |
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| Q |
149 |
gagctatcttcattcggattttccaagtgagtggctcaaagttagaaacccct |
201 |
Q |
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| T |
31445785 |
gagctatcttcattcggattttccaagagagtggctggaagttagaagcccct |
31445733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 34150400 - 34150340
Alignment:
| Q |
107 |
cttcatcactatgaagaaatgcaagacccttggcaacatcaagagctatcttcattcggat |
167 |
Q |
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| T |
34150400 |
cttcatcgctgtgaagatatgcaagacccttagcagcatcaagagcaaccttcattcggat |
34150340 |
T |
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