View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_4 (Length: 518)
Name: NF8198_low_4
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 19043451 - 19042968
Alignment:
| Q |
19 |
tgaagttggtggtttgattttgcagttgattgaaaggattgcaatggcaacttcagagaatcaagttcctccggcacctgatgttgtatgtatatctatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19043451 |
tgaagttggtggtttgattttgcagttgattgaaaggattgcaatggcaacttcagagaatcaagttcctccggcacctgatgttgtatgtatatctatg |
19043352 |
T |
|
| Q |
119 |
ttcttattgtttttcatacaatgttgtgaatcacgggttatggaaaatagcggtttgtttaagttctgctacggtgcagtgctatagtgccgcattaggc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19043351 |
ttcttattgtttttcatacaatgttgtgaatcacgggttatggaaaatagcggtttgtttaagttctgctacggtgcagtgctatagtgccgcattaggc |
19043252 |
T |
|
| Q |
219 |
gttatttgaaaaactttgtacaaaatagtgtttagcggaacaatagtgccatagtgatgctataatcgctatttgacaatattgggatgatgcatgattt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
19043251 |
gttatttgaaaaactttgtacaaaatagtgtttagcggaacaatagtgccatagtgatgctataatctctatttgacaacattgggatgatgcatgattt |
19043152 |
T |
|
| Q |
319 |
gatttctgttaatgataacatagctgactgttttttaatgttactggtttaggttggtcatgcctttgttgaacagtactactacatgttgcatgaaagc |
418 |
Q |
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| T |
19043151 |
gatttctgttaatgataacatagctgactgttttttaatgttactggtttaggttggtcatgcctttgttgaacagtactactacatgttgcatgaaagc |
19043052 |
T |
|
| Q |
419 |
cctgagcatgtgcataggttttaccaagatgtcagtaagcttggtcgtcctgaaccaaatggtatcatcggtatcacaaccaca |
502 |
Q |
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| T |
19043051 |
cctgagcatgtgcataggttttaccaagatgtcagtaagcttggtcgtcctgaaccaaatggtatcatcggtatcacaaccaca |
19042968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Original strand, 20711185 - 20711668
Alignment:
| Q |
19 |
tgaagttggtggtttgattttgcagttgattgaaaggattgcaatggcaacttcagagaatcaagttcctccggcacctgatgttgtatgtatatctatg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20711185 |
tgaagttggtggtttgattttgcagttgattgaaaggattgcaatggcaacttcagagaatcaagttcctccggcacctgatgttgtatgtatatctatg |
20711284 |
T |
|
| Q |
119 |
ttcttattgtttttcatacaatgttgtgaatcacgggttatggaaaatagcggtttgtttaagttctgctacggtgcagtgctatagtgccgcattaggc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20711285 |
ttcttattgtttttcatacaatgttgtgaatcacgggttatggaaaatagcggtttgtttaagttctgctacggtgcagtgctatagtgccgcattaggc |
20711384 |
T |
|
| Q |
219 |
gttatttgaaaaactttgtacaaaatagtgtttagcggaacaatagtgccatagtgatgctataatcgctatttgacaatattgggatgatgcatgattt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
20711385 |
gttatttgaaaaactttgtacaaaatagtgtttagcggaacaatagtgccatagtgatgctataatctctatttgacaacattgggatgatgcatgattt |
20711484 |
T |
|
| Q |
319 |
gatttctgttaatgataacatagctgactgttttttaatgttactggtttaggttggtcatgcctttgttgaacagtactactacatgttgcatgaaagc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20711485 |
gatttctgttaatgataacatagctgactgttttttaatgttactggtttaggttggtcatgcctttgttgaacagtactactacatgttgcatgaaagc |
20711584 |
T |
|
| Q |
419 |
cctgagcatgtgcataggttttaccaagatgtcagtaagcttggtcgtcctgaaccaaatggtatcatcggtatcacaaccaca |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20711585 |
cctgagcatgtgcataggttttaccaagatgtcagtaagcttggtcgtcctgaaccaaatggtatcatcggtatcacaaccaca |
20711668 |
T |
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