View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_5 (Length: 445)
Name: NF8198_low_5
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 116 - 432
Target Start/End: Original strand, 31334130 - 31334440
Alignment:
| Q |
116 |
ttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtagattttcttcgaaaagggcaagaaccataagattgctg |
215 |
Q |
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| T |
31334130 |
ttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaataggattgtagattttcttcgaaaaaggcaagaaccataagattgctg |
31334229 |
T |
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| Q |
216 |
attttctttctacttgtgtttggattccccctgagcttgatgaaatcatggtaaatgacaatattttttgcaaaagttacactttatacggctgtaataa |
315 |
Q |
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| T |
31334230 |
attttctttctacttgtgtttggatt-cccctgagtttgatgaaatcaaggtaaatgacaatattttttgcaaaagttacactttatacggctgtaataa |
31334328 |
T |
|
| Q |
316 |
aattacaatgtcaacgtgtttctgacaaactcatgctgacaaaataaaagatcaccaaattatggtaatgtgaactcatgcttgattatcaattataagt |
415 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
31334329 |
aattacaatgtcaacgtgtttctgtcaaactc-----gacaaaataaaagatcaccaaattatggtaatgtgaactcatgtttgattatcaattataaat |
31334423 |
T |
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| Q |
416 |
tgtaataatatcttaca |
432 |
Q |
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||||||||||||||||| |
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| T |
31334424 |
tgtaataatatcttaca |
31334440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 31321877 - 31321979
Alignment:
| Q |
116 |
ttggtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtagattttcttcgaaaagggcaagaaccataagattgctg |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| || |
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| T |
31321877 |
ttggtgttaatcctatgatcactattcaatcaactgcattttgtatttcaaataggattgtagattttcttcgaaaggggcaagaatcaaaagattgttg |
31321976 |
T |
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| Q |
216 |
att |
218 |
Q |
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||| |
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| T |
31321977 |
att |
31321979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 429
Target Start/End: Original strand, 31322102 - 31322194
Alignment:
| Q |
341 |
caaactcatgctgacaaaataaaagatcaccaaattatggtaatgtgaactcatgcttgat----tatcaattataagttgtaataatatctt |
429 |
Q |
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|||||||| | |||||||||||||||| | |||||||||||||||| ||||||| ||||| |||||| ||||||||||||| ||||||| |
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| T |
31322102 |
caaactcacggtgacaaaataaaagattgctaaattatggtaatgtgtactcatgtttgattatatatcaaatataagttgtaatcatatctt |
31322194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 18243021 - 18243137
Alignment:
| Q |
1 |
tggaagactaatgtcgcgattattaacaactaattgtcatgcattagtcccacatgaactttgtctgtactcgagctttttacaccgtttctgtgaagta |
100 |
Q |
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| T |
18243021 |
tggaatactaatgtcgcgattattaacaagtaattgtcatgcattagtcccacatgaactttgtttgtactcgagctttttacaccgcttctgtgaagta |
18243120 |
T |
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| Q |
101 |
ttgtttgtttcgagttt |
117 |
Q |
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|||||||||| |||||| |
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| T |
18243121 |
ttgtttgttttgagttt |
18243137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 10926288 - 10926351
Alignment:
| Q |
119 |
gtgttaatcctatgattactattcaatcaactgcattttgtatttcaaataggattgtagatttt |
183 |
Q |
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||||||||||| | || |||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
10926288 |
gtgttaatcctctaataactattcaatcaactgcattttgtatttcaaata-gattgtaaatttt |
10926351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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