View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8198_low_6 (Length: 410)

Name: NF8198_low_6
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8198_low_6
NF8198_low_6
[»] chr1 (5 HSPs)
chr1 (1-391)||(44180573-44180963)
chr1 (142-391)||(44207932-44208187)
chr1 (264-391)||(41556419-41556546)
chr1 (15-47)||(44375495-44375527)
chr1 (24-77)||(6659592-6659645)
[»] chr5 (8 HSPs)
chr5 (252-391)||(11534056-11534185)
chr5 (252-391)||(11497144-11497273)
chr5 (252-391)||(11504471-11504600)
chr5 (252-391)||(11511865-11511994)
chr5 (252-391)||(11519241-11519370)
chr5 (252-391)||(11526646-11526775)
chr5 (252-391)||(11541473-11541602)
chr5 (16-75)||(14257346-14257405)
[»] scaffold1005 (1 HSPs)
scaffold1005 (252-391)||(2616-2745)
[»] chr6 (2 HSPs)
chr6 (242-356)||(14929180-14929294)
chr6 (14-46)||(26694211-26694243)
[»] chr2 (2 HSPs)
chr2 (263-358)||(45048234-45048329)
chr2 (15-55)||(43635250-43635290)
[»] chr7 (3 HSPs)
chr7 (17-55)||(39362026-39362064)
chr7 (15-51)||(5499317-5499353)
chr7 (15-47)||(39566346-39566378)
[»] chr4 (1 HSPs)
chr4 (17-54)||(9316486-9316523)
[»] chr3 (1 HSPs)
chr3 (14-47)||(53892009-53892042)
[»] chr8 (1 HSPs)
chr8 (15-47)||(35574020-35574052)


Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 44180573 - 44180963
Alignment:
Q  1 aataaaattttagactgtttggataaacagtttaattaagcacttatggcataagaaataaacatacaagtgcttatatgtcagctgtttttataataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44180573 aataaaattttagactgtttggataaacagtttaattaagcacttatggcataagaaataaacatacaagtgcttatatgtcagctgtttttataataag 44180672  T
Q  101 atgaaaacaatttatggacatggcttaaactgattttactaaaattctgtattcaataatataatggatgtatgttgagaaattgggcattggctggtta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44180673 atgaaaacaatttatggacatggcttaaactgattttactaaaattctgtattcaataatataatggatgtatgttgagaaattgggcattggctggtta 44180772  T
Q  201 aaattttgattgtcgtaacacttaaaactaacatcatttctattgtgcaggaatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagc 300  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44180773 aaattttgattgtcgtaacgcttaaaactaacatcctttctattgtgcaggaatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagc 44180872  T
Q  301 ataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagcgttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44180873 ataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagcgttaagccgtgatgtcctgttttggagattagatgatttt 44180963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 142 - 391
Target Start/End: Original strand, 44207932 - 44208187
Alignment:
Q  142 aaattctgtattcaataatataatgga---tgtatgttgagaaattgggcattggctggtta--aaattttgattgtcgtaacacttaaa-actaacatc 235  Q
    |||||||||||||| || |||||||||   ||||||| ||||||||||| ||||||||||||  |||||||   |  ||  |||||| || |||||||||    
T  44207932 aaattctgtattcagtattataatggaggatgtatgtggagaaattgggaattggctggttagtaaattttttgttgcggtacacttgaagactaacatc 44208031  T
Q  236 atttctattgtgcaggaatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgtt 335  Q
     | |||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||    
T  44208032 ctctctattatgcagtaatcatcgtggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactactggccgcagaggaaagacagtt 44208131  T
Q  336 ggtgtctcaaagaagcgttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    ||||| ||||||||||||||||| || ||||  ||  ||||||||||| |||||||    
T  44208132 ggtgtgtcaaagaagcgttaagctgttatgttttgacttggagattagatgatttt 44208187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 264 - 391
Target Start/End: Original strand, 41556419 - 41556546
Alignment:
Q  264 ttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagcgttaagccgtga 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||| || |    
T  41556419 ttgaggcactactggggccttcgtgttcgtggtcagcataccaagactactggccgcagaggaaagacagttggtgtgtcaaagaagcgttaagctgtta 41556518  T
Q  364 tgtcctgttttggagattaggtgatttt 391  Q
    |||  ||  ||||||||||| |||||||    
T  41556519 tgttttgacttggagattagatgatttt 41556546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 44375527 - 44375495
Alignment:
Q  15 ctgtttggataaacagtttaattaagcacttat 47  Q
    |||||||||||||||||||||||||||||||||    
T  44375527 ctgtttggataaacagtttaattaagcacttat 44375495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 6659592 - 6659645
Alignment:
Q  24 taaacagtttaattaagcacttatggcataagaaataaacatacaagtgcttat 77  Q
    ||||||||||||||||||||||| ||||| || ||| | |||| ||||||||||    
T  6659592 taaacagtttaattaagcacttaaggcatcagcaattatcatataagtgcttat 6659645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 11534056 - 11534185
Alignment:
Q  252 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||           ||| |||||||||||||||||||    
T  11534056 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccacgactacaggc----------tgactgttggtgtctcaaagaagc 11534145  T
Q  352 gttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11534146 gttaagccgtgatgtcctgttttggagattagatgatttt 11534185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 11497144 - 11497273
Alignment:
Q  252 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||           ||| |||||||||||||||||||    
T  11497144 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccacgactataggc----------tgactgttggtgtctcaaagaagc 11497233  T
Q  352 gttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11497234 gttaagccgtgatgtcctgttttggagattagatgatttt 11497273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 11504471 - 11504600
Alignment:
Q  252 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagc 351  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||           ||| |||||||||||||||||||    
T  11504471 aatcaccggggtttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggc----------tgactgttggtgtctcaaagaagc 11504560  T
Q  352 gttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11504561 gttaagccgtgatgtcctgttttggagattagatgatttt 11504600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 11511865 - 11511994
Alignment:
Q  252 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagc 351  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||           ||| |||||||||||||||||||    
T  11511865 aatcaccggggtttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggc----------tgactgttggtgtctcaaagaagc 11511954  T
Q  352 gttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11511955 gttaagccgtgatgtcctgttttggagattagatgatttt 11511994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 11519241 - 11519370
Alignment:
Q  252 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagc 351  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||           ||| |||||||||||||||||||    
T  11519241 aatcaccggggtttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggc----------tgactgttggtgtctcaaagaagc 11519330  T
Q  352 gttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11519331 gttaagccgtgatgtcctgttttggagattagatgatttt 11519370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 11526646 - 11526775
Alignment:
Q  252 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagc 351  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||           ||| |||||||||||||||||||    
T  11526646 aatcaccggggtttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggc----------tgactgttggtgtctcaaagaagc 11526735  T
Q  352 gttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11526736 gttaagccgtgatgtcctgttttggagattagatgatttt 11526775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 11541473 - 11541602
Alignment:
Q  252 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagc 351  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |          || |||||||||||||||||||    
T  11541473 aatcatcggggtttgaggcacaactggggccttcgtgttcgtggtcagcataccacgactacaggctg----------actgttggtgtctcaaagaagc 11541562  T
Q  352 gttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  11541563 gttaagccgtgatgtcctgttttggagattagatgatttt 11541602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 14257346 - 14257405
Alignment:
Q  16 tgtttggataaacagtttaattaagcacttatggcataagaaataaacatacaagtgctt 75  Q
    ||||||||||||||  ||||||||||||||||  |||||| | |||||||| ||||||||    
T  14257346 tgtttggataaacaacttaattaagcacttataacataagcactaaacatataagtgctt 14257405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 2616 - 2745
Alignment:
Q  252 aatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagc 351  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||           ||| |||||||||||||||||||    
T  2616 aatcaccggggtttgaggcactactggggcctttgtgttcgtggtcagcataccacgactacaggc----------tgactgttggtgtctcaaagaagc 2705  T
Q  352 gttaagccgtgatgtcctgttttggagattaggtgatttt 391  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  2706 gttaagccgtgatgtcctgttttggagattagatgatttt 2745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 14929180 - 14929294
Alignment:
Q  242 attgtgcaggaatcaccggggtttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtc 341  Q
    |||||||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||    
T  14929180 attgtgcaggaatcaccgaggtttgagacattactggggtcttcgtgttcgtggacagcataccaagactactggacgcagaggaaagaccgttggtgtc 14929279  T
Q  342 tcaaagaagcgttaa 356  Q
    || ||||||||||||    
T  14929280 tctaagaagcgttaa 14929294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 26694211 - 26694243
Alignment:
Q  14 actgtttggataaacagtttaattaagcactta 46  Q
    |||||||||||||||||||||||||||| ||||    
T  26694211 actgtttggataaacagtttaattaagcgctta 26694243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 263 - 358
Target Start/End: Complemental strand, 45048329 - 45048234
Alignment:
Q  263 tttgaggcactactggggccttcgtgttcgtggtcagcataccaagactacaggccgcaggggaaagaccgttggtgtctcaaagaagcgttaagc 358  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| || | |||||  |||||||||||||||||||| |||||    
T  45048329 tttgaggcactactgtggccttcgtgctcgtggtcagcataccaagactactggccgtagagaaaagattgttggtgtctcaaagaagcgataagc 45048234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 43635290 - 43635250
Alignment:
Q  15 ctgtttggataaacagtttaattaagcacttatggcataag 55  Q
    |||||| ||||||||| |||||||||||||||| |||||||    
T  43635290 ctgtttagataaacagcttaattaagcacttatagcataag 43635250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 39362026 - 39362064
Alignment:
Q  17 gtttggataaacagtttaattaagcacttatggcataag 55  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  39362026 gtttggataaacattttaattaagcacttatagcataag 39362064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 5499353 - 5499317
Alignment:
Q  15 ctgtttggataaacagtttaattaagcacttatggca 51  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  5499353 ctgtttggataaacaatttaattaaccacttatggca 5499317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 39566378 - 39566346
Alignment:
Q  15 ctgtttggataaacagtttaattaagcacttat 47  Q
    |||||||| ||||||||||||||||||||||||    
T  39566378 ctgtttgggtaaacagtttaattaagcacttat 39566346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 9316486 - 9316523
Alignment:
Q  17 gtttggataaacagtttaattaagcacttatggcataa 54  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  9316486 gtttggataaacagcttaattaagcacttatagcataa 9316523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 53892042 - 53892009
Alignment:
Q  14 actgtttggataaacagtttaattaagcacttat 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  53892042 actgtttggataaacagcttaattaagcacttat 53892009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 35574020 - 35574052
Alignment:
Q  15 ctgtttggataaacagtttaattaagcacttat 47  Q
    ||||||||||||||||||||||||||| |||||    
T  35574020 ctgtttggataaacagtttaattaagctcttat 35574052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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