View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8198_low_7 (Length: 400)

Name: NF8198_low_7
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8198_low_7
NF8198_low_7
[»] chr5 (1 HSPs)
chr5 (18-392)||(1779943-1780326)
[»] chr7 (6 HSPs)
chr7 (252-392)||(42679028-42679168)
chr7 (252-392)||(3934518-3934658)
chr7 (252-315)||(16533494-16533557)
chr7 (252-315)||(16632105-16632168)
chr7 (340-389)||(16497321-16497370)
chr7 (254-345)||(19788671-19788762)
[»] chr4 (4 HSPs)
chr4 (252-392)||(42468889-42469029)
chr4 (18-113)||(22581184-22581279)
chr4 (193-257)||(22580795-22580861)
chr4 (119-179)||(22580997-22581057)
[»] chr8 (2 HSPs)
chr8 (252-392)||(4878914-4879054)
chr8 (284-378)||(36377740-36377835)
[»] chr2 (1 HSPs)
chr2 (284-378)||(31488698-31488793)
[»] chr1 (1 HSPs)
chr1 (270-370)||(29833632-29833732)


Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 1780326 - 1779943
Alignment:
Q  18 agttgttgggtggtgagaaggaagaccttctttagttgccaagtgataaggcacttttgagcgaccttgtattccgcctacttgttgagaaatatgttgc 117  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1780326 agttgttgggtggtgagaaggaaggccttcttcagttgccaagtgataaggcacttttgagcgaccttgtatttcgcctacttgttgagaaatatgttgc 1780227  T
Q  118 cgatgaagatgctttctttgctgattatgccgaggctcgtcaaaagctctttgagcttgggtttgcagaagc---------ggcgtgtggtgtttgagaa 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  1780226 cgatgaagatgctttctttgctgattatgtcgaggctcgtcaaaagctctttgagcttgggtttgcagaagcctaagaagcggcgtgtggtgtttgagaa 1780127  T
Q  209 gcatggtgcatcttacataaatttcagacattgctcttattttgaatgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaag 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780126 gcatggtgcatcttacataaatttcagacattgctcttattttgaatgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaag 1780027  T
Q  309 ttatgaatgtcccgtccaattccaaagccaccttgggtagttgttagtatggatttttccctggattactatggagtctctgct 392  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780026 ttatgaatgtcccgtccaattcctaagccaccttgggtagttgttagtatggatttttccctggattactatggagtctctgct 1779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 42679168 - 42679028
Alignment:
Q  252 gaatgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaagttatgaatgtcccgtccaattccaaagccaccttgggtagttg 351  Q
    |||| |||||||||| ||||| ||||| | |||||||||||||||||||||||||||||||  |||| |||||||||||| ||||||||||||| |||||    
T  42679168 gaattcaagtcactataacttctagtcacaaaggaaccattgaaggatacaacaaagttatatatgttccgtccaattcctaagccaccttgggaagttg 42679069  T
Q  352 ttagtatggatttttccctggattactatggagtctctgct 392  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  42679068 ttagtatggatttttccttggattactatggagtctctgct 42679028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 252 - 392
Target Start/End: Original strand, 3934518 - 3934658
Alignment:
Q  252 gaatgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaagttatgaatgtcccgtccaattccaaagccaccttgggtagttg 351  Q
    |||| ||||| |||||||||| ||||| | ||||||||||||||||| |||||||||||||  ||||||||||||||||| ||||||||||||| |||||    
T  3934518 gaattcaagttactagaacttctagtcacaaaggaaccattgaaggaaacaacaaagttatatatgtcccgtccaattcctaagccaccttgggaagttg 3934617  T
Q  352 ttagtatggatttttccctggattactatggagtctctgct 392  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  3934618 ttagtatggatttttccttggattactatggtgtctctgct 3934658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 16533557 - 16533494
Alignment:
Q  252 gaatgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaagttatgaa 315  Q
    |||| |||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||    
T  16533557 gaattcaagtcactagaacttctagtcacaaaggaaccattgaaggatacaaaaaagttatgaa 16533494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 16632105 - 16632168
Alignment:
Q  252 gaatgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaagttatgaa 315  Q
    |||| |||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||    
T  16632105 gaattcaagtcactagaacttctagtcacaaaggaaccattgaaggatacaaaaaagttatgaa 16632168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 16497370 - 16497321
Alignment:
Q  340 cttgggtagttgttagtatggatttttccctggattactatggagtctct 389  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  16497370 cttgggaagttgttagtatggatttttccttggattactatggagtctct 16497321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 19788671 - 19788762
Alignment:
Q  254 atgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaagttatgaatgtcccgtccaattccaaagccaccttggg 345  Q
    |||||||||||||||||||| |  | | ||||||||||| |||||||  |||||||||||  ||   |||||| |||| |||||||||||||    
T  19788671 atgcaagtcactagaactttcacacacaaaggaaccattcaaggataagacaaagttatgtctgcttcgtccagttcctaagccaccttggg 19788762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 252 - 392
Target Start/End: Complemental strand, 42469029 - 42468889
Alignment:
Q  252 gaatgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaagttatgaatgtcccgtccaattccaaagccaccttgggtagttg 351  Q
    |||| ||||| |||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||||    
T  42469029 gaattcaagttactagaacttctagtcacaaaggaaccattgaaggaaacaacaaagttatgtatgtcccgtccaattcctaagccaccttgggaagttg 42468930  T
Q  352 ttagtatggatttttccctggattactatggagtctctgct 392  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  42468929 ttagtatggatttttccttggattactatggtgtctctgct 42468889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 22581279 - 22581184
Alignment:
Q  18 agttgttgggtggtgagaaggaagaccttctttagttgccaagtgataaggcacttttgagcgaccttgtattccgcctacttgttgagaaatatg 113  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  22581279 agttgttgggtggtgagaaggaaggccttcttcagttgccaagtgataaggcacttttgagcgaccctgtattccgcccacttgttgagaaatatg 22581184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 22580861 - 22580795
Alignment:
Q  193 gtgtggtgtttgagaagcatggtgcatcttacataaattt--cagacattgctcttattttgaatgc 257  Q
    ||||||||||||||| | ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  22580861 gtgtggtgtttgagaggaatggtgcatcttacataaatttcacagacattgctcttattttgaatgc 22580795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 22581057 - 22580997
Alignment:
Q  119 gatgaagatgctttctttgctgattatgccgaggctcgtcaaaagctctttgagcttgggt 179  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||||| | |||||||||||    
T  22581057 gatgaagatgctttctttgctgattatgccgaagctcatcagaagctatctgagcttgggt 22580997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 252 - 392
Target Start/End: Original strand, 4878914 - 4879054
Alignment:
Q  252 gaatgcaagtcactagaacttttagtcgcgaaggaaccattgaaggatacaacaaagttatgaatgtcccgtccaattccaaagccaccttgggtagttg 351  Q
    |||| ||||| |||||||||| ||||| | ||||||||||||||||| |||||||||||||  ||||||||||||||||| ||||||||||||| |||||    
T  4878914 gaattcaagttactagaacttctagtcacaaaggaaccattgaaggaaacaacaaagttatatatgtcccgtccaattcctaagccaccttgggaagttg 4879013  T
Q  352 ttagtatggatttttccctggattactatggagtctctgct 392  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  4879014 ttagtatggatttttccttggattactatggtgtctctgct 4879054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 378
Target Start/End: Complemental strand, 36377835 - 36377740
Alignment:
Q  284 ggaaccattgaaggatacaacaaagttatgaatgtcccgtccaattccaaagccaccttgggtagttgttagtatggatttttccc-tggattact 378  Q
    ||||||||| ||||||| ||||||||||||  ||   |||||| |||| ||||||||||||| || ||||| ||| |||||||||| |||||||||    
T  36377835 ggaaccattcaaggataaaacaaagttatgtctgcttcgtccagttcctaagccaccttgggaagatgttactattgatttttcccttggattact 36377740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 31488698 - 31488793
Alignment:
Q  284 ggaaccattgaaggatacaacaaagttatgaatgtcccgtccaattccaaagccaccttgggtagttgttagtatggatttttccc-tggattact 378  Q
    ||||||||| ||||||| ||||||||||||  ||   |||||| |||| ||||||||||||| || ||||| ||| |||||||||| |||||||||    
T  31488698 ggaaccattcaaggataaaacaaagttatgtctgcttcgtccagttcctaagccaccttgggaagatgttactattgatttttcccttggattact 31488793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 370
Target Start/End: Complemental strand, 29833732 - 29833632
Alignment:
Q  270 cttttagtcgcgaaggaaccattgaaggatacaacaaagttatgaatgtcccgtccaattccaaagccaccttgggtagttgttagtatggatttttccc 369  Q
    |||||||| || ||||||| ||| ||| | | |||||||||||  ||| | ||||||||||| ||||||||||||  || ||||| ||| ||||||||||    
T  29833732 cttttagttgcaaaggaactattcaagaagaaaacaaagttatatatgcctcgtccaattcctaagccaccttggaaagatgttactattgatttttccc 29833633  T
Q  370 t 370  Q
    |    
T  29833632 t 29833632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University