View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_8 (Length: 388)
Name: NF8198_low_8
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 53 - 332
Target Start/End: Original strand, 42849650 - 42849928
Alignment:
| Q |
53 |
ttatctgattcaaaggccaaactggtcaaatctaccactaccctccacaacataacaactcttcaactataaagaaaaaacagacaaccaatttggtaac |
152 |
Q |
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| T |
42849650 |
ttatctgattcaaaggccaaactggtcaaatctaccactaccctccacaacataacaactct-caaatataaagaaaaaacagacaaccaatttggtaac |
42849748 |
T |
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| Q |
153 |
actgcattgctcatacacaatttcactattgcagtaatacttgaatagtagtagtgctttccctcttttcttctcttctctcaccgacccactctgaagc |
252 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42849749 |
actgcattgctcatacacaatttcactattggagtaatacttgaatagtagtagtgctttccctcttttcttctcttctctcaccgacccactctgaagc |
42849848 |
T |
|
| Q |
253 |
cttggccccacacgtatttgccaccagcagcgttctattctaatcttgtgtcatgattatatataaaactaaactgtgat |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42849849 |
cttggccccacacgtatttgccaccagcagcgttctattctaatcttgtgtgatgattatatataaaactaaactgtgat |
42849928 |
T |
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