View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8198_low_9 (Length: 353)
Name: NF8198_low_9
Description: NF8198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8198_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 22654572 - 22654909
Alignment:
| Q |
16 |
atgaaaagctaaagaagcaagaagcttggcaaacgaaaataaaataaaatagtccttgttatttttgagaggaactctactagggtaatttctttatagc |
115 |
Q |
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| T |
22654572 |
atgaaaagctaaagaagcaagaagcttggcaaacgaaaataaaataaaatagtccttgttatttttgagaggaactctactagggtaatttctttatagc |
22654671 |
T |
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| Q |
116 |
acactgtagatacttttaaccaaatnnnnnnnntcatcacattgcagtagtacaatgcaagttggccatgagagttaaaactatacaagacagaaatatc |
215 |
Q |
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| T |
22654672 |
acactgtagatacttttaaccaaataaaaaaaatcatcacattgcagtagtacattgcaagttggccatgagagttaaaactatacaagacagaaatatc |
22654771 |
T |
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| Q |
216 |
ttgtcccatacctatttaccaatatatcaaaattataattattttattcggataaaatcattttacggttggaaagaaagtacaataatcttattaattt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22654772 |
ttgtcccatacctatttaccaatatatcaaaattataattattttattcggataaaatcattttacggttggaaagaaagtacaataatcttattaattt |
22654871 |
T |
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| Q |
316 |
gtggctattataactctacaagtggtagtgtgaacatt |
353 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
22654872 |
gtggctattataagtctacaagtggtagtgtgaacatt |
22654909 |
T |
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