View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_high_1 (Length: 1102)
Name: NF8199_high_1
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 646; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 313 - 1083
Target Start/End: Complemental strand, 3096884 - 3096115
Alignment:
| Q |
313 |
tcacaacccatactaaacaaatttaatttaatggtaagaacttggttctctaatctcaatatgttgaatttgattcattattttgaacttacataccact |
412 |
Q |
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| T |
3096884 |
tcacaacccatactaaacaaatttaatttaatggtaagaacttggctctctaatctcaatatgttgaatttgattcattattttgaacttacataccact |
3096785 |
T |
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| Q |
413 |
tgaacggggataatttgacattctctgtcacctgctcaacctccattgnnnnnnnnggagaaggtaagataatttcgatacttccaaaagaaccacacaa |
512 |
Q |
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| T |
3096784 |
tgaacggggataatttgacattctctgtcacctgctcaacctccattgttttttt-ggagaaggtaagataatttcgatacttccaaaagaaccacacga |
3096686 |
T |
|
| Q |
513 |
catattgccacatcgaggtcaaacttatcttggtcttaactctatctcctagagatccaaaaataagaaaaaggatcatataagtaaaagcacaagtgac |
612 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
3096685 |
catattgctacatcgaggtcaaacttatcttggtcttaactctatctcctagagatccaaaaataagaaaaatgaccatataagtaaaagcacaagtgac |
3096586 |
T |
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| Q |
613 |
gaaaatgtgactcctcaattcaactcacttttcaaataagacataacttgcgtcattagggtcagaaatgatccttcatctaaatgggttatgacgggta |
712 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3096585 |
gaaaatgtgactccccaattcaactcacttcccaaataagacataacctgcgtcattagggtcagaaatgatccttcatctaaatgggttatgacgggta |
3096486 |
T |
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| Q |
713 |
agaatcttatctagaagcggttgtcaagagaagacaataactttagacgagtctcaactcctcaaaatatttggtcataatatggatctcctcctcatgt |
812 |
Q |
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| T |
3096485 |
agaatcttatctaaaaacggttgtcaagagaagacaataaccttagatgagtctcaactcctcaaaacatttggtcataatatggatctcatcctcatgt |
3096386 |
T |
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| Q |
813 |
tgttttccctccaagataggagccgtcaaaaggaacaaatatgccaaaactaacaaagtaaatttcgcccaagtcaaacttccaagaccggaagtcacta |
912 |
Q |
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| T |
3096385 |
tgttttccctccaagataggagccgccgaaaggaacgaatatgccaaaactaacagagtaaatttcgcccaagtcaaacttccaagaccggaagtcacta |
3096286 |
T |
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| Q |
913 |
tcttgggaacacctacaaccaatccagggccaccataagaatttcaaacctgtcatgtccccaaacaaagctctctccgataaaaaatcccaaagcaaat |
1012 |
Q |
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| T |
3096285 |
tcttgagaacacctacaaccaatccagggccaccataagaatttcaaacctatcatgtccccaaacaaagctctctccaataaaagatcccaaagcaaat |
3096186 |
T |
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| Q |
1013 |
cacaccctcattcccacaccacgtactcatatcagcaatcatgaaatattttttatttaagacatggtaaa |
1083 |
Q |
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| T |
3096185 |
cacaccctcattcccacaccacgtactcatatcagcaaccatgaaatattttttatttaagacatggtaaa |
3096115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 3098724 - 3098547
Alignment:
| Q |
17 |
acatcaaaatggaatggaatacttaatcaataaatcttcaaaattgtttagatgcatgcctnnnnnnnn-tattgattgggttgggtccatcgataatga |
115 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
3098724 |
acatcaaaatggaatagaataattaatcaataaatcttcaaaattgtttagatgcatgcctaaaaaaaaatattgattgggttgggtccattgataatga |
3098625 |
T |
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| Q |
116 |
ttcagattttgatttaggactatttttacctcacaaatgctttctatcttccaaaatcttattattctttgggatttt |
193 |
Q |
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| T |
3098624 |
ttcagattttgatttaggactatttttacctcacaaatgctttctatcttccaaaatcttattattctttgggatttt |
3098547 |
T |
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