View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_high_11 (Length: 437)
Name: NF8199_high_11
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 24225426 - 24224992
Alignment:
| Q |
1 |
gaaactaaaccaagacaaattgaagaacaagcataaccaaaataaaccaaaccaaattcaaaatcctacccaaaattggagagacgaacaaccaaataac |
100 |
Q |
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| T |
24225426 |
gaaaccaaaccaagacaaattgaaaaacaagcataaccaaaacaaaccaaaccaaattccaaatcctacccgaaattggagagacgaacaaccaaat--- |
24225330 |
T |
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| Q |
101 |
caatcttgatcaaaccaccacagacaaatat---cccacaatnnnnnnnnnntgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaa |
197 |
Q |
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| T |
24225329 |
------tgatcaaaccaccacggacaaatagtaacccacaa-acaaaaaaaatgcatcctcaaacaaataaaccaagaacaagagcgatccaaagacaaa |
24225237 |
T |
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| Q |
198 |
aactcaaacgaaaagaacacccatacacatcccaaaacatgacaaaactatacatatcaaccaacaaccggagcaaaccgaacaaacattaaccaatgac |
297 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24225236 |
aactcaaacaaaaagaacacccatacacatcccaaaacatgacaaaactatacatatcaaccaacaaccggagcagaccgaacaaacattaaccaatgac |
24225137 |
T |
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| Q |
298 |
gacaagcatcaaag-----aaacaagtaaataccacggtgaaagaataacttctacgtctctaaaatccaaaatattgatgattgatgcaattaatttca |
392 |
Q |
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| T |
24225136 |
gacaagcatcaaagaaattaaacaagtaaataccatggtgaaagaataacttctacgtctctaaaatccaaaatattgatgattgatgcaattaatttca |
24225037 |
T |
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| Q |
393 |
aaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatcta |
437 |
Q |
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| T |
24225036 |
aaacgtgctcaaaaccatccaaacaatatgcacaccgtgaatcta |
24224992 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 17922213 - 17922298
Alignment:
| Q |
35 |
aaccaaaataaaccaaaccaaattcaaaatcctacccaaaattggagagacgaacaaccaaataaccaatcttgatcaaaccacca |
120 |
Q |
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| T |
17922213 |
aaccaaaatgaaccaaaccaaattcgaagccctgtcaaaaattggagagacaaacaaccaaataagtagcattgatcaaaccacca |
17922298 |
T |
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