View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_high_16 (Length: 400)
Name: NF8199_high_16
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 64 - 381
Target Start/End: Complemental strand, 28987019 - 28986702
Alignment:
| Q |
64 |
atgattgaatttgactggtttttaaattaccaaacatatttttacaatagaacttaaacataaatagattgcattagaatggttgcttggcaatccggct |
163 |
Q |
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| T |
28987019 |
atgattgaatttgactggtttttaaattaccaaacatatttttacaatagaacttaaacattaatagattgcattagaatggttgcttggcaatccggct |
28986920 |
T |
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| Q |
164 |
cagtttatgtttaggctagcatctatggttctcaaaatgttcgatcagattgatacatacaaaaagaagaagatgaaaataataattaatcttgtaatta |
263 |
Q |
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| T |
28986919 |
cagtttatgtttagagtagcatctatggttctcaaaatgttcgatcagattgatacatacaaaaagaagaagatgaaaataataattaatcttgtaatta |
28986820 |
T |
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| Q |
264 |
aaattgtatgtttatattgtgtctagtgtccaaaaatcatttttgttaatctaattgattaaaaaactttaactttaatacatatatcaaattgaatggt |
363 |
Q |
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| T |
28986819 |
aaattgtatgtttatattgtgtctagtgtccaaaaatcatttttgttaatgtaattgattaaaaaactttaactttaatacatatatcaaattgaatggt |
28986720 |
T |
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| Q |
364 |
attattattgagtgagtt |
381 |
Q |
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| T |
28986719 |
attattattgagtgagtt |
28986702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28987096 - 28987056
Alignment:
| Q |
1 |
cgtccgaattgataattcttgatgtaatatgttccatttcg |
41 |
Q |
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| T |
28987096 |
cgtccgaattgataattcttgatgtaatatgttccatttcg |
28987056 |
T |
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