View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_high_17 (Length: 393)
Name: NF8199_high_17
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Complemental strand, 25038299 - 25037933
Alignment:
| Q |
19 |
acaagacttgtttgtaggtttatgcatccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaag |
118 |
Q |
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| T |
25038299 |
acaagacttgtttgtaggtttatgcagccactgacaacaggagagtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccagag |
25038200 |
T |
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| Q |
119 |
agcaatctaagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaatataccacaatcaaataatgacacagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25038199 |
agcaatctaagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgctaatataccacaatcaaataatgacacagg |
25038100 |
T |
|
| Q |
219 |
cacacctggatatttcaaggatactcatgtcaatttaacaagtaagaacaccttgatcacaactccttatgaagaattgaaataaccttaatccattgat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25038099 |
cacacctggatatttcaaggatactcatgtcaatttaacaagtaagaacaccttgatcacaactccttatgaagaactgaaataaccttaatccattgat |
25038000 |
T |
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| Q |
319 |
agaaaaatcaatttctcacatgccttcctttgattttctattccatgaaaagaagataattcatttc |
385 |
Q |
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| T |
25037999 |
agaaaaatcaatttctcacatgccttcctttgattttctattccatggaaagaagataattcatttc |
25037933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 24 - 296
Target Start/End: Complemental strand, 25017189 - 25016917
Alignment:
| Q |
24 |
acttgtttgtaggtttatgcatccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaagagcaa |
123 |
Q |
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| T |
25017189 |
acttgtttgcaggtttatgcagccattgaccacaggagagtatccattaagcatggtgtcttttgcgggaaatcgtttaccaaagttcaccaaagagcaa |
25017090 |
T |
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| Q |
124 |
tctaagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaatataccacaatcaaataatgacacaggcacac |
223 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | | |
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| T |
25017089 |
tctaagatgcttattggctcatttgattttattggaatcaattactacacctccaaatatgctgccaatataccacaatcaaatagcgacacaagtgatc |
25016990 |
T |
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| Q |
224 |
ctggatatttcaaggatactcatgtcaatttaacaagtaagaacaccttgatcacaactccttatgaagaatt |
296 |
Q |
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| T |
25016989 |
caagctatctcaaggatactcatgtcaaatttacaagtaagaataccttgtttacaactccttatgaagaatt |
25016917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 4624098 - 4623933
Alignment:
| Q |
27 |
tgtttgtaggtttatgcatccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaagagcaatct |
126 |
Q |
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|||||| |||||||| || |||||||||||||||| ||||||| ||||| ||||||||||||||||| || ||||||||||||| |||||||||| |
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| T |
4624098 |
tgtttgcaggtttatacagccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagctaccaaagttcactgcagagcaatct |
4623999 |
T |
|
| Q |
127 |
aagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaat |
192 |
Q |
| |
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|||| ||||||||| |||| |||||||||||||||||||||||||||| || |||||||||||| |
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| T |
4623998 |
aagagtcttattgggtcatatgattttattggaatcaattactacaccagcatgtatgctgccaat |
4623933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 4599767 - 4599605
Alignment:
| Q |
27 |
tgtttgtaggtttatgcatccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaagagcaatct |
126 |
Q |
| |
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|||||| |||||||| || ||||||||||| |||| ||||||| ||| ||||||||||| ||| | || |||||||||||||| ||||||||||| |
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| T |
4599767 |
tgtttgcaggtttatacagccactgacaaccggagagtatccagcaaacatggtgtctttcgtgaaagat---ttaccaaagttcactgaagagcaatct |
4599671 |
T |
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| Q |
127 |
aagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaat |
192 |
Q |
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|| | ||||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
4599670 |
aaaagtcttattgggtcatatgattttattggaatcaattactacaccaccatgtatgctgccaat |
4599605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 18804712 - 18804875
Alignment:
| Q |
27 |
tgtttgtaggtttatgcatccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaagagcaatct |
126 |
Q |
| |
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|||||| |||||| | || |||||||||||||||| ||| ||| |||||||||||||| || ||| || |||||||||||||| |||||||||| | |
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| T |
18804712 |
tgtttgcaggtttttacaaccactgacaacaggagagtacccagcaagcatggtgtctaatttggaaaca---ttaccaaagttcactaaagagcaatat |
18804808 |
T |
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| Q |
127 |
aagattcttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaata |
193 |
Q |
| |
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||| ||||||||| |||| |||||||||||||| |||||||||||||||| ||||||| ||||| |
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| T |
18804809 |
gagagtcttattgggtcatacgattttattggaattaattactacacctccacgtatgctgtcaata |
18804875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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