View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_high_20 (Length: 339)
Name: NF8199_high_20
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 327
Target Start/End: Original strand, 46161753 - 46162066
Alignment:
| Q |
14 |
attttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattcgttacgaaagatttatacaagaaattaagagaagaatgcataataataag |
113 |
Q |
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| T |
46161753 |
attttaagtatgagtttgacgtaagcaagggccaaggagcagtgctattcgtt-cgaaagatttatacaagaaattaagagaagaatgcataataataag |
46161851 |
T |
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| Q |
114 |
agatattgactaatcaaattctatgttatatgctgccacatataatcatttattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaa |
213 |
Q |
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| T |
46161852 |
agatattgactaatcaaattctatgttatatgctgccacatat---catttattttcttgtcaaactttttctcttaacaataaacatcttcccagaaca |
46161948 |
T |
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| Q |
214 |
atatataattatcttcttcggctgtcaactggggtgggaacaaatggcgaagcctactttttgttca----atatgagaacataactgcatgttgcttta |
309 |
Q |
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| T |
46161949 |
atatataattatcttcttcagctgtcaactggggtgggaacaaatggcgaagcctactttttgttcaatatatatgggaacataactgcatgttgcttta |
46162048 |
T |
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| Q |
310 |
atggagatgactagttca |
327 |
Q |
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| T |
46162049 |
atggagatgactagttca |
46162066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 53 - 220
Target Start/End: Original strand, 46169121 - 46169285
Alignment:
| Q |
53 |
cagtgctattcgttacgaaagatttatacaagaaattaagagaagaatgcataataataagagatattgactaatcaaattctatgttatatgctgccac |
152 |
Q |
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| T |
46169121 |
cagtgctatttgttacgaaagatctatacaagaaataaagagaagaatgcataataataagagat-ttgactaatcaaattctatgttacatgctgctac |
46169219 |
T |
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| Q |
153 |
atataatcatttattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatata |
220 |
Q |
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| T |
46169220 |
atataatcatttattttcttgtcaaactttt--tcttaacgataaacattttcccagaacaatatata |
46169285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 46245279 - 46245191
Alignment:
| Q |
239 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacataactgcatgttgctttaatggagatgactagttca |
327 |
Q |
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| T |
46245279 |
caactggggtgggaacaaatggtgaagcctacgttttgttcaatatgggaacataactgcatgatgcttcaatggagatgactagttca |
46245191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 46254967 - 46254879
Alignment:
| Q |
239 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacataactgcatgttgctttaatggagatgactagttca |
327 |
Q |
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| T |
46254967 |
caactgggttgggaacatttggtgaagcctactatttgttcaatatgggaacatagctgcatgatgcttcaatggagatgactagttca |
46254879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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