View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8199_high_21 (Length: 338)
Name: NF8199_high_21
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 74 - 319
Target Start/End: Original strand, 35454989 - 35455235
Alignment:
| Q |
74 |
atcttaacaagtaatcacacgaatttacatatatatacagatatggaaaagttaattgcacatagaaatcagagagtaaattagcaaggatgagaaaact |
173 |
Q |
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| T |
35454989 |
atcttaacaagtaatcacacgaatttacatatatatacagatatggaaaagttaattgcacatagaaatcacagagtaaattagcaaggatgagaaaact |
35455088 |
T |
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| Q |
174 |
atgtcaaagacaatgatgggaatgtaacaatatcatcatttttcttcttatatgc-ttgcaaaaagatgttcaagatgatgagcatggaacaaggaggat |
272 |
Q |
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| T |
35455089 |
atgtcaaagacaatgatgggaatgtaacaatatcatcctttttcttcttatatgctttgcaaaaagatgttcaagatgatgagcatggaacaaggaggat |
35455188 |
T |
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| Q |
273 |
atggaaaattacaaaatacaccttcttgtattgtcacatgtctattt |
319 |
Q |
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| T |
35455189 |
atggaaaattacaaaatacaccttcttgtattgtcacatgtctattt |
35455235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35454867 - 35454930
Alignment:
| Q |
1 |
atggagcatcaagataatgaaatt-aatatatctattgtcgtttttattgcaaccaaattggaa |
63 |
Q |
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| T |
35454867 |
atggagcatcaagataatgaaatttaatatatctattgtcgtttttattgcaaccaaatcggaa |
35454930 |
T |
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