View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8199_high_25 (Length: 317)
Name: NF8199_high_25
Description: NF8199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8199_high_25 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 44133829 - 44133548
Alignment:
| Q |
22 |
ttattaatgatatatcaaataaataactggagcagaatataaaacaaatcac-aaattatattacttttaatattatgttacatgttgaatgtagacagg |
120 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44133829 |
ttataaatgatatatcaaataaataactggagcagaatataaaacaaatcactaaattatattacttttaatattatgttacatgttgaatgtagacagg |
44133730 |
T |
|
| Q |
121 |
ttattcatccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaaataattaagcacctcatatagcgacacttcgcaaaacaacagttt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
44133729 |
ttattcatccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaaataaataagcacctcatatagcgatacttcgcaaaacaacagttt |
44133630 |
T |
|
| Q |
221 |
caatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtcttcaatccatcttgagctga |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
44133629 |
caatggtaagacccggtccaaagccaaataaaacaccaaattcaagtccttctcctgtggtcttcaatccatcttgagctga |
44133548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 44129622 - 44129343
Alignment:
| Q |
22 |
ttattaatgatatatcaaataaataactggagcagaatataaaacaaatcacaaattatattacttttaatattatgttacatgttgaatgtagacaggt |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
44129622 |
ttataaatgatatatcaaataaataactggagtagaatctaaaacaaatcacaaattatattacttttaatatgatattacatgttgaatgtagacaggt |
44129523 |
T |
|
| Q |
122 |
tattcatccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaaataattaagcacctcatatagcgacacttcgcaaaacaacagtttc |
221 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44129522 |
tattcatccttaca-aaaaatcaagcaaatttgaaagtgattcatgaaaataaaataattaagcacctcatatagcgacactgcgcaaaacaacagtttc |
44129424 |
T |
|
| Q |
222 |
aatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtcttcaatccatcttgagctga |
302 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
44129423 |
aatagtaagacctggtccaaagccaaataaaacaccccactcaagtccttctcccgtggtcttcagtccatcttgagctga |
44129343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 81 - 302
Target Start/End: Complemental strand, 44142192 - 44141970
Alignment:
| Q |
81 |
attacttttaatattatgttacatgttgaa-tgtagacaggttattcatccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaaataa |
179 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| | |||||| ||| |||| |||||||||||||||||| ||||||||| |||||||| || |||||||||| |
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|
| T |
44142192 |
attatttttaatatgatggtacatgttgaactctagacaagtttttcaaccttacataaaaatcaagaaaatttgaaagtgatacaagataataaaataa |
44142093 |
T |
|
| Q |
180 |
ttaagcacctcatatagcgacacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtg |
279 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44142092 |
ttaagcacctcatatagcgacactgcgtaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtg |
44141993 |
T |
|
| Q |
280 |
gtcttcaatccatcttgagctga |
302 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
44141992 |
gtcttcaatccatcttgagctga |
44141970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 86 - 303
Target Start/End: Complemental strand, 1505963 - 1505745
Alignment:
| Q |
86 |
ttttaatattatgttacatgttgaa-tgtagacaggttattcatccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaaataattaag |
184 |
Q |
| |
|
||||||||| ||| || |||||||| | || ||| ||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
1505963 |
ttttaatatgatggtaaatgttgaactctacacaagtttttcatccttacataaaaatcaagcaaatttgaaagtgatatatgaaaataaaataattaag |
1505864 |
T |
|
| Q |
185 |
cacctcatatagcgacacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtctt |
284 |
Q |
| |
|
|| |||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||| | ||| |||||||||| || ||||| |
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|
| T |
1505863 |
catctcatatagcaacactacgcaaaacaacagtttcaatagtaagtcccggtccaaagccaaataacacaccccattcatgtccttctccggtagtctt |
1505764 |
T |
|
| Q |
285 |
caatccatcttgagctgat |
303 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1505763 |
caatccatcttgagctgat |
1505745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 303
Target Start/End: Complemental strand, 1493112 - 1492936
Alignment:
| Q |
128 |
tccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaa-ataattaagcacctcatatagcgacacttcgcaaaacaacagtttcaatgg |
226 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||| ||| ||||||| || |||||||| || ||||||| ||||| ||||| |||||||| ||||||| |
|
|
| T |
1493112 |
tccttacataaaaataaagcaaatttaaaagtgataaatggaaataaatatgattaagcatcttatatagctacactgcgcaagacaacagtctcaatgg |
1493013 |
T |
|
| Q |
227 |
taagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtcttcaatccatcttgagctgat |
303 |
Q |
| |
|
|||| || ||||||||||| |||| ||||| | ||| | |||||||| || |||||||| |||| ||||| |||| |
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|
| T |
1493012 |
taagtcctggtccaaagccgaatagcacaccccattcatgcccttctccggttgtcttcaaaccattttgagttgat |
1492936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 1483099 - 1482980
Alignment:
| Q |
165 |
atgaaaataaaataattaagcacctcatatagcgacacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactca |
264 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| ||||| |||||||||| |||||||||||||| || ||||||||||| || || ||||| | ||| |
|
|
| T |
1483099 |
atgaaaataaactaattaagcttatcatatagccacactgtgcaaaacaacggtttcaatggtaagtccaggtccaaagccgaacaacacaccccaatca |
1483000 |
T |
|
| Q |
265 |
agtccttctcccgtggtctt |
284 |
Q |
| |
|
|| |||||||| |||||||| |
|
|
| T |
1482999 |
agcccttctcctgtggtctt |
1482980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 303
Target Start/End: Complemental strand, 1487531 - 1487438
Alignment:
| Q |
210 |
aacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtcttcaatccatcttgagctgat |
303 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| || || || || | | |||||||||||| ||||||| | ||| |||||||||||| |
|
|
| T |
1487531 |
aacaacagtttcaatggtaagtccaggtccaaagccgaacaacactccccatttaagtccttctcctgtggtctcaagtccctcttgagctgat |
1487438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 1500105 - 1500067
Alignment:
| Q |
206 |
gcaaaacaacagtttcaatggtaagacccggtccaaagc |
244 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
1500105 |
gcaaaacaacagtttcaatggtaagtccaggtccaaagc |
1500067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 303
Target Start/End: Original strand, 46706141 - 46706342
Alignment:
| Q |
103 |
atgttgaa-tgtagacaggttattcatccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaaataattaagcacctcatatagcgaca |
201 |
Q |
| |
|
|||||||| ||||||| ||| ||||||||||||||||||||||||||||||| | |||||| || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
46706141 |
atgttgaactgtagacgagtttttcatccttacataaaaatcaagcaaatttggaagtgataaataaaaataaaataattaagcatttcatatagcgaca |
46706240 |
T |
|
| Q |
202 |
cttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtcttcaatccatcttgagctg |
301 |
Q |
| |
|
|| |||||||||||||||| |||||||| || ||||||||||||||||| ||||| | |||||||||||||| || ||||||| |||||||||| || |
|
|
| T |
46706241 |
ctgtgcaaaacaacagtttctatggtaagtcctggtccaaagccaaataacacaccccattcaagtccttctcctgttgtcttcagaccatcttgagttg |
46706340 |
T |
|
| Q |
302 |
at |
303 |
Q |
| |
|
|| |
|
|
| T |
46706341 |
at |
46706342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 124 - 295
Target Start/End: Complemental strand, 5303443 - 5303272
Alignment:
| Q |
124 |
ttcatccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaaataattaagcacctcatatagcgacacttcgcaaaacaacagtttcaa |
223 |
Q |
| |
|
||||||||||| ||||||| || |||||| || ||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
5303443 |
ttcatccttacgtaaaaattaaacaaattgaaaattgatacatgaaaacaaaataattaagcatctcatatagcgacactgcgcaaaacaaccgtttcaa |
5303344 |
T |
|
| Q |
224 |
tggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtcttcaatccatctt |
295 |
Q |
| |
|
| ||||| || |||||||| |||||||| ||||| | |||||||||||||| || |||||||| ||||||| |
|
|
| T |
5303343 |
ttgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttctccagttgtcttcaacccatctt |
5303272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 124 - 290
Target Start/End: Original strand, 5288876 - 5289038
Alignment:
| Q |
124 |
ttcatccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaaataattaagcacctcatatagcgacacttcgcaaaacaacagtttcaa |
223 |
Q |
| |
|
||||||||||||||||| | || |||||||||| || ||||||||||||||||||| || ||||||| || ||||| || |||||||||||||||| |
|
|
| T |
5288876 |
ttcatccttacataaaagttaaacaaatttgaa----atcaatgaaaataaaataattaaacatctcatatggccacactacgtaaaacaacagtttcaa |
5288971 |
T |
|
| Q |
224 |
tggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtcttcaatcc |
290 |
Q |
| |
|
||||||| || |||||||| |||||||| ||||| | |||||||||||||| || ||||||||||| |
|
|
| T |
5288972 |
tggtaagtcctggtccaaaaccaaataagacaccccattcaagtccttctccagttgtcttcaatcc |
5289038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 295
Target Start/End: Complemental strand, 5316051 - 5315887
Alignment:
| Q |
126 |
catccttacataaaaatcaagcaaatttgaaggtgatacatgaaaataaaataattaagcacctcatatagcgacacttcgcaaaacaacagtttcaatg |
225 |
Q |
| |
|
|||| |||||||||||| || |||||||||| ||||||| |||||||| |||||| |||||||||| || || ||||||||||| ||||||||| |
|
|
| T |
5316051 |
catcattacataaaaattaaacaaatttgaaatcgatacataaaaataaa-----taagcatctcatatagccacgctgcgcaaaacaaccgtttcaatg |
5315957 |
T |
|
| Q |
226 |
gtaagacccggtccaaagccaaataaaacaccaaactcaagtccttctcccgtggtcttcaatccatctt |
295 |
Q |
| |
|
||||| || |||||||| |||||||| ||||| | ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
5315956 |
gtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctcccgttgtcttcaatccgtctt |
5315887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 160 - 303
Target Start/End: Complemental strand, 5311307 - 5311165
Alignment:
| Q |
160 |
gatacatgaaaataaaataattaagcacctcatatagcgacacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaa |
259 |
Q |
| |
|
|||| |||||||||||||| |||| || ||||||| | ||||| ||||||||||| |||||||||||||| || |||||||| |||||||| ||||| |
|
|
| T |
5311307 |
gataaatgaaaataaaata-ttaaacatctcatatggtcacactacgcaaaacaactgtttcaatggtaagtcctggtccaaaaccaaataatacacccc |
5311209 |
T |
|
| Q |
260 |
actcaagtccttctcccgtggtcttcaatccatcttgagctgat |
303 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||||| |||| |
|
|
| T |
5311208 |
actcaagtccttctcccgttgtcttcaatccgttttgagttgat |
5311165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 303
Target Start/End: Complemental strand, 5285206 - 5285076
Alignment:
| Q |
173 |
aaaataattaagcacctcatatagcgacacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacaccaaactcaagtccttc |
272 |
Q |
| |
|
|||| ||||||||| ||||||| || ||||| ||||||||||| |||||||||||||| || |||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
5285206 |
aaaaaaattaagcatctcatatggcaacactgcgcaaaacaacggtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc |
5285107 |
T |
|
| Q |
273 |
tcccgtggtcttcaatccatcttgagctgat |
303 |
Q |
| |
|
|||||| ||||||||||| | ||||| |||| |
|
|
| T |
5285106 |
tcccgttgtcttcaatccgttttgagttgat |
5285076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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